Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe10g00358 ATGGATACCGCTGGGAGACTCATTGCTGGGTCTCATAATCGAAACGAGTTTGTTCTGATCAATGCAGACGAGACTGCTCGGATCAAGGCTGTGAAGGAATTGAGTGGACAAACATGTCAGATTTGTGGAGACGAGGTTGAGTTAACTGTTGAGGGAGAGCTCTTTGTTGCCTGTAATGAATGTGCTTTCCCAGTTTGTAGACCTTGTTATGAGTATGAGAGAAGAGAGGGAAACCAAGCCTGTCCACAGTGTAAAACCAGATACAAACGTATTAAAGGTAGTCCGAGGGTTGAGGGTGATGAGGATGAAGATGGTATCGATGATTTGGACAACGAGTTCGACTATGCAAACCTTGATTCTGTGGGCCCTTATCATTCTGGAGAGGGAACGTATGGCTCGTACCATAACACGGGCCGTGGACAGTCGGAGGTCGAACCTTCTCCCCTTGGTTCTGAGATTCCTCTCCTGACATATGGCGAGGTGGATTATGAGATTTCTTCTGATCAACATGCTCTTGTGCCCCATTTTATGGGTCACGGGAATCGAGTCCATCCAATGCCTTTCCATGATCCATCAATTCCTTCTCAACCTAGACCGATGGTTCCCCAAAAAGATATTGCGGTGTATGGTTATGGGAGCGTGGCATGGAAGGACCGAATGGAAGATTGGAAGAAGAAGCAAAATGATAAACTTCAAGTGGTGAAACACCAAGGAGTTGATGATGGTGGAAACGATATCGATGATCCCGATTTGCCCATGATGGATGAAGCTAGGCAACCACTATCAAGGAAATTACCCATCTCTTCGAGCAGGATAAATCCGTACAGATTAATCATCTTGCTTCGTCTTGTTATTCTCGGCCTGTTTTTCCAGTACAGAATTCTTCATCCAGTTAAAGATGCCTATGGCCTGTGGTTAACTTCGGTAATATGTGAAATATGGTTCGCCGTTTCGTGGATTCTGGATCAGTTCCCAAAATGGTGTCCAATAGTACGGGAAACTTATCTCGATAGGCTGTCACTGAGGTATGAGAAAGAAGGGAAGCCTTCTGAATTAGCCAGTGTGGACGTATTTGTTAGTACTGTCGATCCAACGAAAGAACCTCCATTGATCACGGCAAATACAGTACTTTCCATCCTTGCAGTCGACTACCCAGTCGATAAAGTTGCATGCTATGTCTCGGATGATGGTGCAGCCATGTTAACATTCGAAGCACTCTCGGAGACATCTGAATTTGCAAGGAAATGGGTCCCTTTCTGTAAGAAATTCAATATCGAGCCCCGTGCCCCCGAGTTTTATTTCTCTCAGAAGATCGATTATTTGAAGAACAAGGTCCACCCAGCATTTGTCAGGGAAAGGCGAGCGATGAAGAGAGAGTACGAAGAGTTTAAGGTTAGGATAAATGCTTTGGTCTCCATGTCTCAAAAGGTTCCCGAGGATGGCTGGACAATGCAAGACGGTACTCCATGGCCTGGGAACAATGTTCGAGACCACCCCGGCATGATTCAGGTTTTCCTTGGCCAGAACGGAGTATGCGACATTGAAGGAAACGAGCTGCCACGTTTGGTTTATGTATCTCGTGAAAAGCGGCCAGGGTTCGAACATCACAAAAAGGCCGGTGCCATGAATTCACTGATTCGGGTCTCAGCTGTTCTGTCAAACGCTCCCTATCTTCTTAATGTTGACTGTGATCACTACATTAACAATAGCAAGGCACTTAGAGAAGCTATGTGTTTCATGATGGATCCGACATCCGGGAAGAAAGTTTGTTATGTGCAGTTTCCTCAAAGATTCGATGGGATCGATCGACACGATAGATATTCAAACCGGAACGTTGTATTCTTTGATATTAACATGAAAGGATTAGACGGAATACAAGGACCGATATACGTCGGTACGGGATGTGTTTTCCGGAGGGTTGCCCTCTACGGATTTGACGCTCCTTCCGAGAAAAAACCGCCAAGCAAAACATGCAACTGTTTGCCAAAATGGTGCTGTCTATGTTGTGGGTCTAGAAGGAACAAGAAAGGAAAGGCTAAGAAAGAGAAAAAGAAGAAGACGAAGCACAGAGAAGCATCAAAGCAGATCCATGCTCTCGAGAATATCGAGGAGGGAATCGAAGAACTAAGCGTAGAGAAACTGAGCGTGTCTGAAATAAAACTGGCGAAGAAATATGGGCAATCTCCAGTGTTCGTCGCCTCGACCCTGTTGGAAAATGGAGGCGTTCCTCATGATGTGAGTGCTGCATCTCTTCTAAGAGAAGCCATTCAAGTCATCAGTTGTGGTTATGAAGATAAAACAGAATGGGGGAAAGAGGTTGGCTGGATTTATGGTTCTGTGACTGAAGATATCTTAACTGGATTCAAAATGCACTGTCATGGCTGGCGGTCAGTGTATTGTATTCCGAAGAGACCCGCGTTTAAGGGGTCAGCTCCGATCAATCTCTCGGATCGTCTACACCAAGTTCTTCGGTGGGCTTTAGGATCCGTCGAGATATTCTTGAGCAGACACTGTCCTATCTGGTATGGTTATGGAGGCGGGTTGAAATGGTTGGAACGATTTTCGTACATAAACTCGGTGGTCTATCCGTGGACCTCGATTCCGTTGCTCGTTTACTGTAGTCTTCCAGCTATCTGTCTTCTCACTGGAAAATTTATTGTTCCTGAGATTAGCAACTATGCTAGTCTTATTTTCATGGCACTCTTCATTTCAATTGCTGCGACCGGTATCCTCGAGATGCAGTGGGGCGGTGTCGGGATCGACGACTGGTGGAGGAACGAGCAGTTCTGGGTTATCGGAGGCGTTTCGTCGCATCTTTTTGCTCTCTTCCAAGGTCTACTCAAGGTTTTAGCTGGTGTGAGTACCAACTTCACAGTTACATCCAAAGCAGCCGATGATGGTGAATTTTCAGAGCTCTATATTTTCAAGTGGACATCATTGTTAATACCTCCCACGACCTTGTTGATCATAAACATCGTCGGTGTGATCGTCGGGATCTCAGATGCCATCAATAATGGATACGATTCCTGGGGTCCTCTTTTCGGGAGGCTATTTTTCGCTCTTTGGGTGATTATCCACCTCTACCCGTTCCTGAAGGGATTGTTAGGGAAACAGGATCGGATACCGACGATCATCGTTGTTTGGTCCATTCTTTTAGCCTCAATCTTAACATTACTTTGGGTAAGGATCAACCCATTTGTATCCAGAGATGGTCCTGTTTTAGAAGTTTGCGGGTTGAACTGTGATTAG 3249 45.58 MDTAGRLIAGSHNRNEFVLINADETARIKAVKELSGQTCQICGDEVELTVEGELFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRIKGSPRVEGDEDEDGIDDLDNEFDYANLDSVGPYHSGEGTYGSYHNTGRGQSEVEPSPLGSEIPLLTYGEVDYEISSDQHALVPHFMGHGNRVHPMPFHDPSIPSQPRPMVPQKDIAVYGYGSVAWKDRMEDWKKKQNDKLQVVKHQGVDDGGNDIDDPDLPMMDEARQPLSRKLPISSSRINPYRLIILLRLVILGLFFQYRILHPVKDAYGLWLTSVICEIWFAVSWILDQFPKWCPIVRETYLDRLSLRYEKEGKPSELASVDVFVSTVDPTKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFNIEPRAPEFYFSQKIDYLKNKVHPAFVRERRAMKREYEEFKVRINALVSMSQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQNGVCDIEGNELPRLVYVSREKRPGFEHHKKAGAMNSLIRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKVCYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRVALYGFDAPSEKKPPSKTCNCLPKWCCLCCGSRRNKKGKAKKEKKKKTKHREASKQIHALENIEEGIEELSVEKLSVSEIKLAKKYGQSPVFVASTLLENGGVPHDVSAASLLREAIQVISCGYEDKTEWGKEVGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPIWYGYGGGLKWLERFSYINSVVYPWTSIPLLVYCSLPAICLLTGKFIVPEISNYASLIFMALFISIAATGILEMQWGGVGIDDWWRNEQFWVIGGVSSHLFALFQGLLKVLAGVSTNFTVTSKAADDGEFSELYIFKWTSLLIPPTTLLIINIVGVIVGISDAINNGYDSWGPLFGRLFFALWVIIHLYPFLKGLLGKQDRIPTIIVVWSILLASILTLLWVRINPFVSRDGPVLEVCGLNCD 1082
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2114592 2121034 + Cp4.1LG10g03330.1 Cpe10g00358 475895
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe10g00358 1082 SUPERFAMILY RING/U-box 26 111 - -
Cpe10g00358 1082 Pfam Zinc-binding RING-finger 29 105 IPR027934 -
Cpe10g00358 1082 PANTHER CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 9 [UDP-FORMING]-RELATED 1 1081 - -
Cpe10g00358 1082 CDD mRING-HC-C4C4_CesA_plant 37 87 - -
Cpe10g00358 1082 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 21 112 IPR013083 -
Cpe10g00358 1082 ProSiteProfiles Zinc finger RING-type profile. 39 85 IPR001841 -
Cpe10g00358 1082 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 1 1081 - -
Cpe10g00358 1082 SUPERFAMILY Nucleotide-diphospho-sugar transferases 364 900 IPR029044 -
Cpe10g00358 1082 Pfam Cellulose synthase 355 1070 IPR005150 GO:0016020|GO:0016760|GO:0030244
Cpe10g00358 1082 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 510 648 IPR029044 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe10g00358 Cpe19g00547 CCT
Cpe10g00358 Cpe19g00547 ECH
Cpe10g00358 Cpe19g00893 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe10g00358 Cpe-Chr10:2114592 Cpe19g00060 Cpe-Chr19:447906 0 dispersed
Cpe02g00946 Cpe-Chr2:7956603 Cpe10g00358 Cpe-Chr10:2114592 0 transposed
Cpe17g00494 Cpe-Chr17:3890362 Cpe10g00358 Cpe-Chr10:2114592 0 transposed
Cpe10g00358 Cpe-Chr10:2114592 Cpe19g00547 Cpe-Chr19:4637473 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe10g00358 K10999 - csv:101211094 2057.34