Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe10g00372 ATGATACCCTTTTTTCTCAGGCTCTGTTTCTTCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTCCTTCTCTGCTTCCTCTGCAACTTCTTCTTCTTCTTCTTCCTCTCATGGAGACACCCAGAAGCTTATTTCCTTCAAATCTTCACTTCCAAGCCCAGCCCTGCTTCAAAACTGGCTCTCCAATGCCGACCCATGTTCCTTTTCTGGTATTACTTGTAAGGAAACCAGAGTTTCTGTCATAGACTTGAGCTTCTTGTCTTTGAGCTCTAATTTCAGCCATGTTTTCTCCTTGCTTGCGGCGCTCGACCATTTGGAATCGCTTTCTCTCAAATCCACTAACCTTACTGGCTCCATTTCTTTGCCCTCTGGATTCAAGTGTAGCCCTCTGCTTTCCTCTGTAGATCTGTCCCTCAATGGCTTATTTGGGTCTGTTTCTGATGTTTCTAACTTGGGATTTTGCCCCAATCTCAAGTCGCTTAATCTGTCCTTTAACTATTTTGATTTTCCACTTAAAGACTCTGTCCCACGATTCAACCTCGATTTGCAGGTCCTCGATCTTTCTTCCAACCGGATTGTTGGGTCGAAATTAGTTCCATGGATTTTCTCTGGTGGGTGTGGTAATTTGCAGCTCTTGGCATTGAAGGCCAACAAAATTAGCGGCGAGATTAATCTCTCGTCGTGTAATAAACTCCAGCATTTGGATATCTCCGGCAACAATTTCTCTGTGGGTATTCCGTCCTTAGGCGATTGCTCTGTTTTGGAGCATTTGGATATCTCCGGCAACAAGTTCACCGGCGACGTCGGACATGCTCTCTCGTCTTGTCTGCAACTCACCTTTCTGAATCTCTCCAGCAACCAGTTCGTGGGTCCAATCCCTTCGTTTGCATCTCCCAATTTGTGGTTCCTTTCGCTTGCTAACAACGATTTCCAGGGGGAGATTCCTGTAAGTATTGCAGATTTATGTTCTAGTTTGGTTCTGCTCGATCTTTCTTCTAATAGTTTGATTGGGTCTTTACCTTCTGCTATGGGGTCTTGTTCTTCGTTGGAAACATTGGACATTTCGAAAAACAACCTCTCTGGTGAGCTCCCCATCGCCGTTTTTGCCAAAATGAGTAGTCTCAAGAAACTCTCTGTTTCCGACAATAAGTTCTTCGGGGTTTTGTCGGATTCTCTTTCTCATCTCTCCACTTTGAATTCTTTGGATCTGAGTTCTAATAACTTTTCTGGGTCGATTCCGGCGGGGCTCTGTGAAGACCCTAACAACAGTTTGAAGGAATTGTTCCTCCAGAACAATTGGTTAACAGGTCGAATCCCTGCAAGTATTAGCAATTGTTCTCAGCTGGTTTCTCTTGATTTGAGCTTCAACTTTCTGAGTGGGACGATCCCTTCCAGCTTGGGTTCACTTTCCAAGCTCAAGAACTTGATCATGTGGTTGAATCAGCTGGAGGGGGAGATCCCATCTGATTTCAGCAACTTTCAGGGGCTTGAGAATCTGATCCTGGATTTCAATGAGCTCACTGGCACAATCCCTTCAGGGTTAAGCAACTGCACCAACTTGAACTGGATTTCGTTGTCGAATAACCGGTTGAGCGGAGAGATTCCAGCCTGGATCGGCCGCCTCCCGAGCCTCGCCATCCTTAAACTCAGCAACAACTCGTTCTATGGTCAGATTCCTCCGGAGCTAGGCGATTGTCGGAGCTTGATCTGGCTTGACCTGAATACCAATCTGTTGAATGGAACAATCCCTCCTGAGTTGTTTCGTCAATCAGGTAACATTGCTGTTAACTTCATTACAGGGAAGTCTTATGCTTACATTAAGAACGATGGTAGCAAGCAGTGCCATGGCGCTGGAAATTTGCTCGAGTTTGCTGGAATTAGACAAGAACAAGTGAACAGGATTTCAAGCAAGAGCCCCTGCAATTTCACCAGAGTTTATAAAGGAATGACTCAGCCAACCTTTAACCATAATGGCTCCATGATTTTTCTTGATCTTTCCCATAATATGTTGTCTGGTAGTATCCCTAAGGAGATTGGTTCTACAAATTATCTATACATTTTGGATTTGGGACATAACAGTCTCTCGGGACCGATCCCGCAGGAGGTCGGTGGCTTGACGAAGCTCAACATTCTTGATCTATCAAGCAATGAGCTTGAAGGATCAATTCCATTGTCTTTGACAGGACTTTCCTCCCTCATGGAGATTGATCTGTCCAACAATCATCTCAATGGTTCGATACCCGAATCAGCTCAGTTCGAAACGTTCCCAGCGTCGGGATTTGCGAATAATTCTGGCCTATGTGGGTATCCTCTCCCTTCATGTGGGGTTGATTCAGGAGCAAGTGCAAATTCTCAGCATCAAAGATCTCATAGGAAACAGGCATCCCTTGCAGGGAGTGTTGCAATGGGGCTACTCTTCTCGCTTTTCTGTATTTTCGGACTGATTATTGTCGTTGTCGAGACGAGGAAGCAAAGGAAAAAGAAGGATTCTACTCTTGATACTTACGTCGAGAGTCATTCACCTCCAGGCACGACGACCACGGTTAACTGGAAGTTAACCGGTGCTCGTGAAGCATCGAGTATTAGTCTTGCAACATTTGAGAAGCCACTTCGGAAGCTTACATTTGCTGATCTCCTCAAGGCTACGAATGGCTTCCACAACGATAGCCTGATTGGTTCGGGGGGTTTCGGCGACGTATATAAGGCTCGATTGAAGGATGGAAGCACTGTCGCGATCAAGAAGCTGATTCATGTCAGTGGACAGGGTGATCGAAAGCGACCCACAGACTCTGCTGATTTCGGTGACAACAATCTCGTCGGATGGGTAAAACAACACGCCAAGTTGGACCTAACCGATGTGTTCGATCGCGAACTGATAAAGGAAGATCCAAGCTTGAAGATAGAGCTTTTAGAACACTTGAAGGTAGCTGTTGCGTGCTTAGACGATAGGTCGTGGCGGCGTCCAACGATGATCCAAGTAATGACAATGTTCAAGGAAATCCAAGCAGGGTCGGGGATGATGGATTCCCAATCCACGATCGGAACCGAGAACGGAGGATTCAGCGTCGACATTGTAGACATGAGCTTAAAGGAAGTACCAGAACCAGAAGGCAAGTAA 3117 45.68 MIPFFLRLCFFLLLLLLLLLLSFSASSATSSSSSSSHGDTQKLISFKSSLPSPALLQNWLSNADPCSFSGITCKETRVSVIDLSFLSLSSNFSHVFSLLAALDHLESLSLKSTNLTGSISLPSGFKCSPLLSSVDLSLNGLFGSVSDVSNLGFCPNLKSLNLSFNYFDFPLKDSVPRFNLDLQVLDLSSNRIVGSKLVPWIFSGGCGNLQLLALKANKISGEINLSSCNKLQHLDISGNNFSVGIPSLGDCSVLEHLDISGNKFTGDVGHALSSCLQLTFLNLSSNQFVGPIPSFASPNLWFLSLANNDFQGEIPVSIADLCSSLVLLDLSSNSLIGSLPSAMGSCSSLETLDISKNNLSGELPIAVFAKMSSLKKLSVSDNKFFGVLSDSLSHLSTLNSLDLSSNNFSGSIPAGLCEDPNNSLKELFLQNNWLTGRIPASISNCSQLVSLDLSFNFLSGTIPSSLGSLSKLKNLIMWLNQLEGEIPSDFSNFQGLENLILDFNELTGTIPSGLSNCTNLNWISLSNNRLSGEIPAWIGRLPSLAILKLSNNSFYGQIPPELGDCRSLIWLDLNTNLLNGTIPPELFRQSGNIAVNFITGKSYAYIKNDGSKQCHGAGNLLEFAGIRQEQVNRISSKSPCNFTRVYKGMTQPTFNHNGSMIFLDLSHNMLSGSIPKEIGSTNYLYILDLGHNSLSGPIPQEVGGLTKLNILDLSSNELEGSIPLSLTGLSSLMEIDLSNNHLNGSIPESAQFETFPASGFANNSGLCGYPLPSCGVDSGASANSQHQRSHRKQASLAGSVAMGLLFSLFCIFGLIIVVVETRKQRKKKDSTLDTYVESHSPPGTTTTVNWKLTGAREASSISLATFEKPLRKLTFADLLKATNGFHNDSLIGSGGFGDVYKARLKDGSTVAIKKLIHVSGQGDRKRPTDSADFGDNNLVGWVKQHAKLDLTDVFDRELIKEDPSLKIELLEHLKVAVACLDDRSWRRPTMIQVMTMFKEIQAGSGMMDSQSTIGTENGGFSVDIVDMSLKEVPEPEGK 1038
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2199330 2202926 + Cp4.1LG10g03170.1 Cpe10g00372 475909
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe10g00372 1038 PANTHER SYSTEMIN RECEPTOR SR160 13 924 - -
Cpe10g00372 1038 Gene3D Ribonuclease Inhibitor 43 774 IPR032675 -
Cpe10g00372 1038 Pfam Leucine Rich Repeat 230 247 IPR001611 GO:0005515
Cpe10g00372 1038 Pfam Leucine Rich Repeat 423 445 IPR001611 GO:0005515
Cpe10g00372 1038 Pfam Leucine Rich Repeat 448 469 IPR001611 GO:0005515
Cpe10g00372 1038 Gene3D Transferase(Phosphotransferase) domain 1 928 1002 - -
Cpe10g00372 1038 SUPERFAMILY L domain-like 37 296 - -
Cpe10g00372 1038 SUPERFAMILY L domain-like 651 770 - -
Cpe10g00372 1038 ProSitePatterns Protein kinases ATP-binding region signature. 891 914 IPR017441 GO:0005524
Cpe10g00372 1038 Pfam Brassinosteroid receptor island domain 591 655 IPR045381 -
Cpe10g00372 1038 Gene3D Phosphorylase Kinase; domain 1 846 927 - -
Cpe10g00372 1038 PRINTS Leucine-rich repeat signature 349 362 - -
Cpe10g00372 1038 PRINTS Leucine-rich repeat signature 705 718 - -
Cpe10g00372 1038 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 924 1010 - -
Cpe10g00372 1038 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 13 924 - -
Cpe10g00372 1038 Pfam Leucine rich repeat 495 553 IPR001611 GO:0005515
Cpe10g00372 1038 Pfam Leucine rich repeat 348 408 IPR001611 GO:0005515
Cpe10g00372 1038 Pfam Leucine rich repeat 684 742 IPR001611 GO:0005515
Cpe10g00372 1038 SUPERFAMILY Protein kinase-like (PK-like) 862 915 IPR011009 -
Cpe10g00372 1038 Pfam Leucine rich repeat N-terminal domain 38 73 IPR013210 -
Cpe10g00372 1038 SMART LRR_typ_2 493 517 IPR003591 -
Cpe10g00372 1038 SMART LRR_typ_2 347 370 IPR003591 -
Cpe10g00372 1038 SMART LRR_typ_2 566 589 IPR003591 -
Cpe10g00372 1038 SMART LRR_typ_2 371 394 IPR003591 -
Cpe10g00372 1038 SMART LRR_typ_2 541 565 IPR003591 -
Cpe10g00372 1038 SMART LRR_typ_2 322 346 IPR003591 -
Cpe10g00372 1038 SMART LRR_typ_2 182 204 IPR003591 -
Cpe10g00372 1038 SMART LRR_typ_2 395 419 IPR003591 -
Cpe10g00372 1038 SMART LRR_typ_2 705 728 IPR003591 -
Cpe10g00372 1038 SMART LRR_typ_2 729 752 IPR003591 -
Cpe10g00372 1038 Gene3D - 596 656 - -
Cpe10g00372 1038 PANTHER SYSTEMIN RECEPTOR SR160 924 1010 - -
Cpe10g00372 1038 SUPERFAMILY RNI-like 271 585 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe10g00372 Cpe-Chr10:2199330 Cpe13g00437 Cpe-Chr13:4702710 4.42E-171 dispersed
Cpe10g00372 Cpe-Chr10:2199330 Cpe19g00558 Cpe-Chr19:4712113 4.33E-57 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe10g00372 K13415 - csv:101209118 1601.26