Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe10g00373 ATGGGATCATCGGCGTCGGAAGAAGATATAATAATGGCGACTCTACTGCAAGCCGAACAAGCCGCCGCCGCTATCACCACCAATTTCGCTTCCTTCCCTGAAAACATCAATAATCTGGTTCAACAAACCCTAAAACCCTTCCTCTTCTTCAAAGCCGACGACCAATATTCGTTACAGCAACAACAACAACAGCAATCCGTTTTCCCTTTCCCGTTCCCGTTCCCCTCAACCACCGCCACCGCCACCTCCCATCTCCTTTCCTCGCTCAGGGATGCAGGAGAGAGCGGAAATCACGGCGACTGCGACGGCGACAACCGCAAGGGTGGATTGAGGGTTAGGACGGTGAAGATGAAGAGGATGAAAGGGAGGAGGAAAGTGAGAGAGCCGAGATTCTGCTTCAAAACCATGACGGATGTGGACGTTCTTGACGACGGTTACAAATGGAGAAAGTACGGCCAAAAAGTTGTTAAGAACACCCTCCATCCAAGGAGTTACTATCGTTGCACGGAAGAGAATTGTAAGGTAAAGAAACGAGTAGAAAGATTAGCAGAAGATCCGAGAATGGTGATAACGACCTACGAAGGAAGACACGCTCATTCACCGTCCGATCGTAATTTAGAAGACACCAACATGGGTTGCCTCAACACTTTCTTTTGTTAG 660 48.79 MGSSASEEDIIMATLLQAEQAAAAITTNFASFPENINNLVQQTLKPFLFFKADDQYSLQQQQQQQSVFPFPFPFPSTTATATSHLLSSLRDAGESGNHGDCDGDNRKGGLRVRTVKMKRMKGRRKVREPRFCFKTMTDVDVLDDGYKWRKYGQKVVKNTLHPRSYYRCTEENCKVKKRVERLAEDPRMVITTYEGRHAHSPSDRNLEDTNMGCLNTFFC 219
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2206612 2207614 - Cp4.1LG10g03040.1 Cpe10g00373 475910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe10g00373 219 SMART WRKY_cls 142 201 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cpe10g00373 219 ProSiteProfiles WRKY domain profile. 137 202 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cpe10g00373 219 PANTHER WRKY TRANSCRIPTION FACTOR 13-RELATED 72 205 - -
Cpe10g00373 219 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 72 205 IPR044810 GO:0003700
Cpe10g00373 219 Pfam WRKY DNA -binding domain 143 199 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cpe10g00373 219 SUPERFAMILY WRKY DNA-binding domain 134 201 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cpe10g00373 219 Gene3D WRKY domain 129 195 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe10g00373 Cpe16g00053 CCT
Cpe05g01094 Cpe10g00373 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe10g00373 Cpe-Chr10:2206612 Cpe12g00331 Cpe-Chr12:2190645 3.80E-36 dispersed
Cpe10g00373 Cpe-Chr10:2206612 Cpe10g00377 Cpe-Chr10:2227895 7.23E-10 proximal
Cpe03g01843 Cpe-Chr3:13752289 Cpe10g00373 Cpe-Chr10:2206612 5.92E-51 transposed
Cpe10g00373 Cpe-Chr10:2206612 Cpe16g00053 Cpe-Chr16:726252 8.08E-59 wgd
Cpe10g00373 Cpe-Chr10:2206612 Cpe05g01094 Cpe-Chr5:7267769 1.70E-48 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50092 PF03106 WRKY 4.20E-25 CL0274 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe10g00373 - - cpep:111804309 384.8