Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe10g00390 ATGGCGAATGAGTTTGGGGAATCAACAAGTGTGCCACATCAAAACCCTTCTTGGTCCAGTAATAGTGACAACACTAACAATGATACTGGCGATTTTGAATGCAATATCTGCTTCGAGTTAGCTCAAGACCCAATTATCACTCTTTGCGGCCATCTCTTTTGCTGGCCCTGTCTGTATAGATGGCTGCATCATCACTCGCAATGTCAAGAATGTCCTGTTTGTAAGGCTCTTGTTCAGGAGGAGAAGTTGGTTCCTCTTTATGGTAGGGGTAAAGCACCATCTGACCCAAGATTAAATAGATATCCTGGTATTGATATTCCAAATCGCCCTGCCGGGCAGAGGCCTCAAACAGCACCACCCCCTGCAGCTAATGATTTTGCAAACTACGGGTTTGGATTCACTGGTGGGTTTATGCCAATGGCGGCAGCAAGAATTGGGAACTTCACTTTAGCTACTGCTTTTGGTGGTCTGATCCCATCTTTATTCAACATCCAGTTTCATGGATTTCCTGATGCTACAGTGTATGGAACCACCTCTGGTTACCCCTATGCATTCAACACATTCCATGGGGGTCATGGTCACCATTTTCCACAGCCACCAAGTCGAGGTCAGCATGCTGATAACGTACTGAAAAATCTCTTCTTACTCGTCGGCGTCTTCGTAATTCTTGCCTTGCTTTGGTGGTGA 687 45.85 MANEFGESTSVPHQNPSWSSNSDNTNNDTGDFECNICFELAQDPIITLCGHLFCWPCLYRWLHHHSQCQECPVCKALVQEEKLVPLYGRGKAPSDPRLNRYPGIDIPNRPAGQRPQTAPPPAANDFANYGFGFTGGFMPMAAARIGNFTLATAFGGLIPSLFNIQFHGFPDATVYGTTSGYPYAFNTFHGGHGHHFPQPPSRGQHADNVLKNLFLLVGVFVILALLWW 228
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2290159 2291448 + Cp4.1LG10g02990.1 Cpe10g00390 475927
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe10g00390 228 MobiDBLite consensus disorder prediction 1 24 - -
Cpe10g00390 228 PANTHER RING ZINC FINGER PROTEIN-RELATED 2 227 - -
Cpe10g00390 228 ProSiteProfiles Zinc finger RING-type profile. 34 75 IPR001841 -
Cpe10g00390 228 SUPERFAMILY RING/U-box 30 87 - -
Cpe10g00390 228 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 2 227 IPR045103 GO:0005783|GO:0006511|GO:0061630
Cpe10g00390 228 CDD RING-HC_AtRMA_like 32 76 - -
Cpe10g00390 228 Pfam Zinc finger, C3HC4 type (RING finger) 33 74 - -
Cpe10g00390 228 ProSitePatterns Zinc finger RING-type signature. 49 58 IPR017907 -
Cpe10g00390 228 SMART ring_2 34 74 IPR001841 -
Cpe10g00390 228 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 88 IPR013083 -
Cpe10g00390 228 MobiDBLite consensus disorder prediction 94 119 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe10g00390 Cpe-Chr10:2290159 Cpe15g00802 Cpe-Chr15:8037660 1.47E-29 dispersed
Cpe10g00390 Cpe-Chr10:2290159 Cpe11g00182 Cpe-Chr11:984557 1.60E-78 wgd
Cpe10g00390 Cpe-Chr10:2290159 Cpe19g00574 Cpe-Chr19:4819902 9.11E-135 wgd
Cpe10g00390 Cpe-Chr10:2290159 Cpe07g00444 Cpe-Chr7:2853315 5.18E-68 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe10g00390 K10666 - csv:101205026 446.047