Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe10g00394 ATGTCCCATCATTTTCATCATCATCAACTCAAGATTAATCTCCTCCCCCAACAGATCCGCCCTCTCCACTCCTTCTCCGATTCAATTCCGCCGTCTACCGTCGCCGGAATAGACCCACAACTTCATCATGTTTATGCACCTACATCTACTCCCGGGACCATGTTATCAGAAATCTTCAACTTCCCTCCACCTTCTTCCTCTGCCGTCGTTGAATTCTCCGACAATTTCCCAACTTTACGCCCGCCCAACTCCGTTGCGCCTATGCCGCTTTTTCTCATGAACCCTCCTCCGCCACTGCGATCCCCATCGTCACCCTCTACCTCCTCCACTCTCCACATGCTCCTACCGAACCCACATGGGGGTTTTCAAGGCGGTGTTGGCGTTGGAGATCAAGCGGAGTTTGGTCAATTTGTCGTCGAAAGTCGAGGTCTTTCGCTCTCGCTTCATTCGTCGGACGATGGGGTGAAAGGTGATGAATTGGGAGTTAGGGAGGATGGTGGGGTTTTGTATAGTTATAACAACAACAACAGCAACAACAACAATCAAGTCCGGGATGGAGGAAGTGGATCAACATCGTCAATTTTGCAATATTCTTTGAAAAATAATTCAGAGAATTCTCCTCTTGCTTCACAAATTATGAATCCCAATCATCAAGTTCAAATTGGATTTGGGTCATCTTTGGGAGTTGTAAATGTGTTGAGGAATTCAAGATATGTCAAACCCACACAAGAATTACTCGAGGAATTTTGTAGTGTTGGGAAGGTTCAATTCAAGAAGAATAAGTTCAATACTGAAACCACCACCACCGCCTCCGCCGCCGCCACCGCCGCCGGTGGCTCGTCATCGTCGTCAAAAGATCAACCACCCTTATCGGCTGCTGACAGAATTGAACATCAACGGAGAAAGGTTGAACGGAGATACAACCTGTATAGGGAGCAAATGCAAATGGTAGTGAACTCGTTTGACCTGGTGATGGGGTTCGGGGCGGCAGCGCCCTACACGACATTGACGCAGAAGGCGATGTCGAGGCACTTCCGGTGTCTGAGGGACGCGTTAGCAGAGCAGTTAAAGCAGAGCTACGAGGCGTTGGGGGAGAAAGGCGGCAATGGAGGCTACGGCGTAACAAAAGGAGAGACCCCAAGATTAAAGCTTCTGGAACAGAGCCTCCGCCAGCAGAGGGCTTTCCATCAAATGGGTATGATGGAACAAGAAGCTTGGAGACCACAGCGTGGCCTCCCTGAACGATCTGTCAACATTCTCAGAGCTTGGCTCTTCGAGCATTTTCTTCACCCGTACCCCAGCGACGCAGACAAGCTGCTGTTAGCTCGACAGACTGGTTTGTCCAGAAATCAGGTCTCGAATTGGTTCATTAATGCAAGAGTTCGGTTGTGGAAACCAATGGTGGAAGAAATGTATCAACTTGAAGACAAAGTCGAAACAGACCATCATAGTGATCATCAAGGATCAGAACACAACAACAATAAAACAAAAAACAGTGACATGAATGCACAAAATCCAACACCCACCACTTCCTCTGCTGCTCCACCGCCACCAGCCACCACTGCCGCCGCCCAGCAACTAACAGCTGCTTTCACGGCGACGCATGAGTACTCAGAGCTTCATGATGTATGGCGACATGGAAGTGGAGATCATCAACATTATGAGACTGTTACAGGGACTGACAACATGAATAATAATCATGGACCAACACTTATAAGGTTTGGCCCTACTGCTACGGCCACCGGTGACGTGTCTCTCACTTTAGGGCTCCGCCACACTGGAAACACCTCCTCCTCCTCCTCCGCCGCCGCAGATAACCCTTCTTTCTTCCTTAGAGACTTTGGTCACTCTTAG 1854 49.14 MSHHFHHHQLKINLLPQQIRPLHSFSDSIPPSTVAGIDPQLHHVYAPTSTPGTMLSEIFNFPPPSSSAVVEFSDNFPTLRPPNSVAPMPLFLMNPPPPLRSPSSPSTSSTLHMLLPNPHGGFQGGVGVGDQAEFGQFVVESRGLSLSLHSSDDGVKGDELGVREDGGVLYSYNNNNSNNNNQVRDGGSGSTSSILQYSLKNNSENSPLASQIMNPNHQVQIGFGSSLGVVNVLRNSRYVKPTQELLEEFCSVGKVQFKKNKFNTETTTTASAAATAAGGSSSSSKDQPPLSAADRIEHQRRKVERRYNLYREQMQMVVNSFDLVMGFGAAAPYTTLTQKAMSRHFRCLRDALAEQLKQSYEALGEKGGNGGYGVTKGETPRLKLLEQSLRQQRAFHQMGMMEQEAWRPQRGLPERSVNILRAWLFEHFLHPYPSDADKLLLARQTGLSRNQVSNWFINARVRLWKPMVEEMYQLEDKVETDHHSDHQGSEHNNNKTKNSDMNAQNPTPTTSSAAPPPPATTAAAQQLTAAFTATHEYSELHDVWRHGSGDHQHYETVTGTDNMNNNHGPTLIRFGPTATATGDVSLTLGLRHTGNTSSSSSAAADNPSFFLRDFGHS 617
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2311453 2315203 + Cp4.1LG10g02970.1 Cpe10g00394 475931
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe10g00394 617 Pfam Homeobox KN domain 423 462 IPR008422 GO:0003677|GO:0006355
Cpe10g00394 617 Gene3D - 409 471 - -
Cpe10g00394 617 ProSiteProfiles 'Homeobox' domain profile. 403 466 IPR001356 GO:0003677
Cpe10g00394 617 MobiDBLite consensus disorder prediction 171 194 - -
Cpe10g00394 617 MobiDBLite consensus disorder prediction 273 289 - -
Cpe10g00394 617 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 44 598 - -
Cpe10g00394 617 MobiDBLite consensus disorder prediction 478 524 - -
Cpe10g00394 617 MobiDBLite consensus disorder prediction 273 298 - -
Cpe10g00394 617 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 2 44 598 - -
Cpe10g00394 617 CDD homeodomain 406 467 IPR001356 GO:0003677
Cpe10g00394 617 SMART HOX_1 406 470 IPR001356 GO:0003677
Cpe10g00394 617 Pfam Associated with HOX 232 352 IPR006563 -
Cpe10g00394 617 SUPERFAMILY Homeodomain-like 407 474 IPR009057 -
Cpe10g00394 617 MobiDBLite consensus disorder prediction 478 493 - -
Cpe10g00394 617 MobiDBLite consensus disorder prediction 494 509 - -
Cpe10g00394 617 Coils Coil 293 313 - -
Cpe10g00394 617 SMART prehox3 227 354 IPR006563 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g01122 Cpe-Chr5:7581995 Cpe10g00394 Cpe-Chr10:2311453 1.22E-141 dispersed
Cpe10g00394 Cpe-Chr10:2311453 Cpe13g00140 Cpe-Chr13:1007021 2.19E-78 dispersed
Cpe10g00394 Cpe-Chr10:2311453 Cpe16g00014 Cpe-Chr16:178969 2.94E-29 wgd
Cpe10g00394 Cpe-Chr10:2311453 Cpe19g00580 Cpe-Chr19:4851063 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50095 PF07526 POX 4.80E-37 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe10g00394 - - bhj:120073177 751.895