Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe10g00444 ATGTGGGATCTGAACGACTGCCCTGATGTGAGGGAGGGGGATGAATCCGAAGCCTGTTCCTCTGCCAAGACCTCCATCGAGGGAGACGGGGATGATGACAAACGGAAAAGGGTGGGATCGGCTTCCAATTCCAGTTGTTCGGCTGCGGAGGAGGAGGAGGAGGAGTTGGAGGAGGAAGAAGAGGAGGAGGAAGGATCCGATGAGGTATTGGGCTCCATGGTCATGCAAATTGACACACAAACCCCAAGCCCTGTAACTCGCCAGTTTTTCCCACTTGAAGACACTGAAATCCCACCTCCCCTTCCACTTCCAACTACCGATTCCGCCTTCCCTCGGGCTCACTGGGTTGGGGTCAAATTTGGCCATCCCGATCCTAATAATAACTCCATCAACCCCAATGACCTCTCCCACCCCATTAAGAAGAGCCGCAGAGGCCCAAGGTCTCGTAGCTCCCAGTATCGCGGGGTCACTTTCTACCGGAGAACCGGCCGCTGGGAGTCTCATATTTGGGATTGTGGAAAGCAGGTTTATCTCGGTGGATTCGATACGGCACATGCAGCTGCTCGTGCTTACGATAGAGCGGCCATTAAATTCCGAGGAGTGGAAGCGGACATAAACTTCAGCATCGAAGATTACGAGGACGACTTAAAACAGATGGGTAATCTAACAAAGGAGGAATTTGTGCATGTTCTTCGCCGACAAAGCACTGGGTTTCCCAGAGGAAGCTCCAAGTATAGAGGTGTAACGCTTCACAAGTGTGGAAGATGGGAGGCTCGAATGGGCCAATTTCTTGGCAAGAAGTATGTTTATCTGGGTTTGTTTGATACCGAGATCGAAGCCGCAAGGGCTTATGATAAAGCTGCAATCAAGTGTAATGGCAAAGAAGCTGTCACCAATTTCGATCCCAGCATTTACGAGAGTGAGCTGAATCCGACAACTGACTCAACTAGCAATTTAGCAGACCACAGTCTTGATTTGAGTCTGGGAAATTCAAGCTCAAAGCAAAATGACAGCCCAAATGGTTCCTTAGATCCGCACCATTCTTCTTCAGCTCCTCTACCGATGGAAGCTGATTGGCAACGTAGTCAAGGATTTAGGCCTCCGCAGCTAAATTTGCTGCAAGAATCAAGCGGAGGAGGAGGTAGTGGAAACAAAAATTACAATAATGCACAGAGAGGAAACACTAATAGGTACCTGGAGAGAGAAACTATGCAGCTGCTAAGCCAAACACACATTCAATCTCCAATTTCCTTTGAAATGCAAAGACATGGGCAATTCAGGCGGCAGGCGAGTGGTGTAGATCAGCCCCACTCGCAGATATTGCTTCACAATCAAAATCATCCAACCTTCAATTATCAAATTCAGTTTCCGGGCAGCAGTAATGGAGGCCGAATAATAGGAAGTGATCTATCACTATCTCTAAGTGATCATCAGAATCAAGTTGTTGAATCGGGGCCATCGCAAGTTCTTGCAACTGCTGCAGCATCATCAGGATTCTCTCCCCAGATTAGACCTTCCAAGAATTGGCTGCACAAGAATGGGTTTCATTGTCTCATTAGACCCTCCTAA 1569 48.37 MWDLNDCPDVREGDESEACSSAKTSIEGDGDDDKRKRVGSASNSSCSAAEEEEEELEEEEEEEEGSDEVLGSMVMQIDTQTPSPVTRQFFPLEDTEIPPPLPLPTTDSAFPRAHWVGVKFGHPDPNNNSINPNDLSHPIKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFSIEDYEDDLKQMGNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYESELNPTTDSTSNLADHSLDLSLGNSSSKQNDSPNGSLDPHHSSSAPLPMEADWQRSQGFRPPQLNLLQESSGGGGSGNKNYNNAQRGNTNRYLERETMQLLSQTHIQSPISFEMQRHGQFRRQASGVDQPHSQILLHNQNHPTFNYQIQFPGSSNGGRIIGSDLSLSLSDHQNQVVESGPSQVLATAAASSGFSPQIRPSKNWLHKNGFHCLIRPS 522
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2595462 2601117 - Cp4.1LG10g02330.1 Cpe10g00444 475981
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe10g00444 522 MobiDBLite consensus disorder prediction 369 392 - -
Cpe10g00444 522 PANTHER AP2 DOMAIN TRANSCRIPTION FACTOR 1 520 - -
Cpe10g00444 522 SMART rav1_2 152 214 IPR001471 GO:0003700|GO:0006355
Cpe10g00444 522 SMART rav1_2 244 307 IPR001471 GO:0003700|GO:0006355
Cpe10g00444 522 ProSiteProfiles AP2/ERF domain profile. 152 208 IPR001471 GO:0003700|GO:0006355
Cpe10g00444 522 CDD AP2 243 303 IPR001471 GO:0003700|GO:0006355
Cpe10g00444 522 SUPERFAMILY DNA-binding domain 243 303 IPR016177 GO:0003677
Cpe10g00444 522 MobiDBLite consensus disorder prediction 1 18 - -
Cpe10g00444 522 CDD AP2 152 207 IPR001471 GO:0003700|GO:0006355
Cpe10g00444 522 Gene3D AP2/ERF domain 243 302 IPR036955 GO:0003700|GO:0006355
Cpe10g00444 522 Gene3D AP2/ERF domain 151 210 IPR036955 GO:0003700|GO:0006355
Cpe10g00444 522 MobiDBLite consensus disorder prediction 308 354 - -
Cpe10g00444 522 Pfam AP2 domain 152 200 IPR001471 GO:0003700|GO:0006355
Cpe10g00444 522 Pfam AP2 domain 243 292 IPR001471 GO:0003700|GO:0006355
Cpe10g00444 522 MobiDBLite consensus disorder prediction 1 68 - -
Cpe10g00444 522 MobiDBLite consensus disorder prediction 308 347 - -
Cpe10g00444 522 Coils Coil 42 69 - -
Cpe10g00444 522 SUPERFAMILY DNA-binding domain 151 209 IPR016177 GO:0003677
Cpe10g00444 522 PRINTS Ethylene responsive element binding protein signature 245 256 IPR001471 GO:0003700|GO:0006355
Cpe10g00444 522 PRINTS Ethylene responsive element binding protein signature 283 303 IPR001471 GO:0003700|GO:0006355
Cpe10g00444 522 ProSiteProfiles AP2/ERF domain profile. 244 301 IPR001471 GO:0003700|GO:0006355
Cpe10g00444 522 MobiDBLite consensus disorder prediction 48 68 - -
Cpe10g00444 522 MobiDBLite consensus disorder prediction 121 152 - -
Cpe10g00444 522 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 520 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe10g00444 Cpe19g00630 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe08g01126 Cpe-Chr8:8455417 Cpe10g00444 Cpe-Chr10:2595462 6.45E-84 dispersed
Cpe10g00444 Cpe-Chr10:2595462 Cpe16g00565 Cpe-Chr16:6443669 2.78E-103 dispersed
Cpe05g01156 Cpe-Chr5:7851229 Cpe10g00444 Cpe-Chr10:2595462 6.04E-129 transposed
Cpe10g00444 Cpe-Chr10:2595462 Cpe19g00630 Cpe-Chr19:5121137 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50103 PF00847 AP2 3.60E-10 CL0081 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe10g00444 K09284 - csv:101214724 679.093