Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe10g00472 ATGAGTAATAAAACCCAAATTACGACCACGTCGGGGCACCAGCTTCGGAGGCGCCCATGGCCTGGATTGTTGTTCCCTTGTTCTTCCAAGGCTTTGGGGACTTGCTTCGGTGACGCCAATTGCATGGAACAGTTGTTGGTCCACTGCGCCAACGCCATCGAATCCAACGACGCCACTCTCGCCCAACAAATCCTTTGGGTTCTTAACAACATTGCCCCTCCCGATGGCGACTCCAACCAACGCCTCACTTCCGCCTTCTTACGCGCTCTTGTCACACGCGCTGCCAACACTGGCAACTGCAAGATTCTCGCCTCCATCACCACTTCTGCCTTCTCCTCCTCTCTCACCACACACACCTTCTCCCTCATGGACCTCGCCGCCTTTGTCGACTTAACCCCCTGGCACCGCTTTGGCTTCACCGCTGCCAATGCCGCCATTCTCGACGCCATCGACGGTTACTCCGCCGTCCACGTCGTTGATTTCAGCCTGATGCATTGCATGCAAATCCCCACTCTTATAGACGCCATTGCTACTCGTTTCGAGGTCCCCCCTCTACTCAAACTCACAACCGTCGCTGCTGCTGCCGTTAAAGACGCGCCGCCGATGCTGGAGCTGTCGTACGACGAATTAGGTGCGAAATTGGTGAACTTCGCTAGGTCTAGAAACGTGAGTATGGAATTCAGAGTGGTCCCCTCTTGCCATACAGACGGTTTTGCCAATTTAATCGAACAAATCCGAGTGCAACATTTAATTTACGGACCCGAAAATAACGGAGCGCTGGTTTTTAATTGCCACATGCTTCTCCATTACATCCCCGAAGAAACACTAAACCCAAACCCAAACCCCTCTCCCAGTTTCGACATGTCGTCTTCAGTCCGATCCATGTTTCTCAAAACCATCCGTAGCTTAGATCCAACGATTGTGATTCTAGTAGAGGAAGATGCGGATTTCACGTCCACCGAATTAGTTAGCCGATTGAGATCCGCATTCAATTACCTGTGGATTCCTTACGACTCCATGGATTCGTTTCTTCCGAGGAGCAGCAAGCAGAGGGAATGGTACGAGGCCGACATTTGTTGGAAGATCGAGAATGTAATCGCTCACGAAGGCATCCAGCGAGTTGAAAGATTGGAGCCCAAGGGGCGGTGGATTCAACGGATGCGCAACGCCAAATTCCGTGGGGCTCCGTTCGGGGACGAGGCGGTTTCGGAGGTGAAGACGATGCTGGACGAGCATGCGGCGGGATGGGGGTTGAAGAAGGAAGACGACCACCTGGTGCTGACATGGAAAGGGCACGACGTCGTATTCGCCACCGCTTGGGTACCTTGCTAA 1332 53.08 MSNKTQITTTSGHQLRRRPWPGLLFPCSSKALGTCFGDANCMEQLLVHCANAIESNDATLAQQILWVLNNIAPPDGDSNQRLTSAFLRALVTRAANTGNCKILASITTSAFSSSLTTHTFSLMDLAAFVDLTPWHRFGFTAANAAILDAIDGYSAVHVVDFSLMHCMQIPTLIDAIATRFEVPPLLKLTTVAAAAVKDAPPMLELSYDELGAKLVNFARSRNVSMEFRVVPSCHTDGFANLIEQIRVQHLIYGPENNGALVFNCHMLLHYIPEETLNPNPNPSPSFDMSSSVRSMFLKTIRSLDPTIVILVEEDADFTSTELVSRLRSAFNYLWIPYDSMDSFLPRSSKQREWYEADICWKIENVIAHEGIQRVERLEPKGRWIQRMRNAKFRGAPFGDEAVSEVKTMLDEHAAGWGLKKEDDHLVLTWKGHDVVFATAWVPC 443
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2774827 2776158 - Cp4.1LG10g02040.1 Cpe10g00472 476009
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe10g00472 443 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 14 441 IPR005202 -
Cpe10g00472 443 Pfam GRAS domain family 42 440 IPR005202 -
Cpe10g00472 443 PANTHER SCARECROW-LIKE PROTEIN 32 14 441 - -
Cpe10g00472 443 ProSiteProfiles GRAS family profile. 33 441 IPR005202 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe10g00472 Cpe19g00662 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe10g00472 Cpe-Chr10:2774827 Cpe19g00670 Cpe-Chr19:5347677 1.11E-52 dispersed
Cpe10g00472 Cpe-Chr10:2774827 Cpe10g00479 Cpe-Chr10:2826893 3.71E-50 proximal
Cpe15g00765 Cpe-Chr15:7851120 Cpe10g00472 Cpe-Chr10:2774827 4.67E-113 transposed
Cpe10g00472 Cpe-Chr10:2774827 Cpe19g00662 Cpe-Chr19:5299223 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50106 PF03514 GRAS 2.90E-91 CL0063 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe10g00472 - - cmos:111453455 842.802