Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe10g00479 ATGGATACCTTGTTTCGGCTTGTCAATCTCCAATCTGAGCAATCTTACAATTCCAGCAGGACCAATTCTAGCAGCTCTAGATCTTCCAGACAGAACCAATATCAGTACCATCAACAGGACGACGACCAAGAATGCTACAACCTTCTCATGGATGACGAAGATTTCTCATCCTCTAGTAATTCTAGACAATACTACAATCCATACCATCCACACCCACCTTCCACCGCCACTCCCACACCCATCGATCAATTCTCATACGTCTCCCCCTCTCCCGACATCAACTTCGAATTTTCCGGCAGGTGGGCTGTCGATATTCTCCTTGAGACGGCCAGGGCAATTTCTGAGAGGAACAGCGCCCGCGTTCACCAACTCATGTGGATGCTAAACGAACTTAGCTCCCCCTATGGGGATACGGATCAAAAGCTGGCTGCCTATTTCCTGCAGGCCTTGTTTAGCCGCATGACAGATTCCGGCGACCGTAATTATTGCGCTTTGGCCTCTGCCTCAGAGAAAACATGCTCATTCGATTCAACTAGGAAAGTGATGCTCAAGTTTCAGGAGGTTAGCCCCTGGACCACTTTTGGGCATGTTTCTTGCAATGGCGCATTAATTGAGGCCTTAGAAGGCGAATCGAAGCTACACATAATCGATATCAGTAGCACGTATTGCACTCAGTGGCCTACTTTGCTAGAAGCTCTCGCGACTCGTACGGACGACACGCCGCACCTTCGTCTCACCACGATCGTCACCACCAAGCCCGGTAATGGAACCGGAGTGTCTGCATCTCAAAAAGTAATGAAGGAAATAGGTACGAGAATGGAAAAGTTCGCTAGGCTTATGGGCGTACCTTTCAAATTCAATGCTCTGTACCATTCTGGTGACCTTTCGGAATTGGACTTCGCCAAATTAGATATCAAAGAAGACGAGGCACTTGCCATCAACTGCGTCGGAGCCTTACGTTCCATTACGGCGATTAACAACCGCCGAGATTTTTTGATTTCTTCTTTCCGCAGTTTACGGCCGCGGATAATCACAGTGATAGAAGAGGAAGCCGATCTCGACGTAGGCGTCGATGGGACTGAATTTCTGAGAGGTTTCCAAGAATGTTTGCGATGGTTTAGGGTTTACTTCGAGACATTGGACGAAAGTTTCACGAGGACGAGCAACGAGCGGTTGATGCTCGAGAGAGCTGCCGGTAGGGCAATCGTGGACCTGGTGGCTTGCTCTGCGGCCGACTCGGTTGAGAGACGGGAATCGGCTGTGAGGTGGGCTCAGCGGCTGCATGGAAACGGATTCAGTCCGGTGACGTTCAGCGACGAAGTATGCGACGACGTCAGAGCGCTGTTGAGGAGATACAAGGAAGGATGGGCAATGACACAGAACTCCGACGTCGCCGGAATATTCTTGACGTGGAAAGAGCAGCCGGTGGTGTGGGCCAGTGCATGGAGACCTTGA 1455 50.38 MDTLFRLVNLQSEQSYNSSRTNSSSSRSSRQNQYQYHQQDDDQECYNLLMDDEDFSSSSNSRQYYNPYHPHPPSTATPTPIDQFSYVSPSPDINFEFSGRWAVDILLETARAISERNSARVHQLMWMLNELSSPYGDTDQKLAAYFLQALFSRMTDSGDRNYCALASASEKTCSFDSTRKVMLKFQEVSPWTTFGHVSCNGALIEALEGESKLHIIDISSTYCTQWPTLLEALATRTDDTPHLRLTTIVTTKPGNGTGVSASQKVMKEIGTRMEKFARLMGVPFKFNALYHSGDLSELDFAKLDIKEDEALAINCVGALRSITAINNRRDFLISSFRSLRPRIITVIEEEADLDVGVDGTEFLRGFQECLRWFRVYFETLDESFTRTSNERLMLERAAGRAIVDLVACSAADSVERRESAVRWAQRLHGNGFSPVTFSDEVCDDVRALLRRYKEGWAMTQNSDVAGIFLTWKEQPVVWASAWRP 484
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2826893 2828347 - Cp4.1LG10g02020.1 Cpe10g00479 476016
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe10g00479 484 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 1 483 IPR005202 -
Cpe10g00479 484 MobiDBLite consensus disorder prediction 15 39 - -
Cpe10g00479 484 Pfam GRAS domain family 103 483 IPR005202 -
Cpe10g00479 484 PANTHER PROTEIN SHORT-ROOT 1 483 IPR030019 GO:0003700|GO:0005634|GO:0008356|GO:0009956|GO:0043565|GO:0048366
Cpe10g00479 484 MobiDBLite consensus disorder prediction 55 70 - -
Cpe10g00479 484 ProSiteProfiles GRAS family profile. 93 483 IPR005202 -
Cpe10g00479 484 MobiDBLite consensus disorder prediction 55 83 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe10g00479 Cpe-Chr10:2826893 Cpe17g01083 Cpe-Chr17:8221440 1.33E-152 dispersed
Cpe19g00662 Cpe-Chr19:5299223 Cpe10g00479 Cpe-Chr10:2826893 6.90E-53 dispersed
Cpe10g00472 Cpe-Chr10:2774827 Cpe10g00479 Cpe-Chr10:2826893 3.71E-50 proximal
Cpe05g01143 Cpe-Chr5:7751427 Cpe10g00479 Cpe-Chr10:2826893 4.35E-23 transposed
Cpe17g00461 Cpe-Chr17:3432039 Cpe10g00479 Cpe-Chr10:2826893 3.39E-43 transposed
Cpe10g00479 Cpe-Chr10:2826893 Cpe19g00670 Cpe-Chr19:5347677 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50109 PF03514 GRAS 3.10E-104 CL0063 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe10g00479 - - csv:101204711 850.121