Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe10g00484 ATGGTGTACGCTACAAATGCTGCAAAAATTGTTGCAGTGTCGAGTGGACATTTGCAAATGGGTGCGCCAAAGCAAAAATGGACAGCTGAAGAAGAAGCTGCCCTTAAAGCAGGAGTGATCAAGCATGGAGCAGGCAAATGGCGCACAATACTCACGGATCCTGAGTTCAGCTCAATTTTGCATCAACGCTCAAATGTGGATCTCAAGGATAAGTGGAGAAATATAAATGTTACTGCAATATGGGGGTCTAGGCAAAAAGCCAAGCTCGCACTTAAAAAGAATTCTTTGGCCCTAAAACATCATGATAATCCTATGGCTCTAAGCACCATGCTTCAGAATGAGGAGATTGTTGACGCTAAGCCACTTGCAATTTCGAATGGAACAACTCGCACTAATGCCCCAAAAGAGCCACTAGCAAGATTGGACAGACTTATATCAGAGGCGATTAACAACTTAAAGGAGCCAAGAGGTTCTGACCGGGCTGCAATTGCTCTGTACATAGAGGAACATTACTGGGCTCCACCAAACCTTAAAAAACTCCTTTCAACAAAATTAAAGCATATGACTGCAAATGGAAAGTTGATAAAGGTAAAGCATAAGTACAGAATTGCTCCAAATTCTGCCTTATCTGGAAGAAGAAATGTTCCATTGTTACTCCTTGAGAACAAGCACTTGGATTCTTCAAAGGCCGAGAAGAGTGAAGTCAAAATCATCACTAAATCCCAGGTTGACTCGGAACTTTCAAAGATGAAGGTAATGACTGCAGAGGAGGCAGCTATAGCTGCTGCACGTGCAGTCGCTGAGGCAGAGGCTGCCATTGCAGAGGCTGAAAGGGCAGCAAGGGAAGCAGAAGAAGCAGAGGCTGAAGCTGAATCAGCACAAGTTTTTGCTGAAGCAGCAATGAAGGCGTTGGAGTGCAGAACATTCCCTAGTAGAAGTCCTGTTCAGAAAGTTCTTCTCCAAGCACTTGCTTTTATTGCATTGATGTCTGGCATTATTGGACTTGCAATGTATTCTGAGAAGATGAAGGTGCTGCTGGCTGCTGCATTTCCATGTGCAAGTGATTGTAACTAA 1074 43.85 MVYATNAAKIVAVSSGHLQMGAPKQKWTAEEEAALKAGVIKHGAGKWRTILTDPEFSSILHQRSNVDLKDKWRNINVTAIWGSRQKAKLALKKNSLALKHHDNPMALSTMLQNEEIVDAKPLAISNGTTRTNAPKEPLARLDRLISEAINNLKEPRGSDRAAIALYIEEHYWAPPNLKKLLSTKLKHMTANGKLIKVKHKYRIAPNSALSGRRNVPLLLLENKHLDSSKAEKSEVKIITKSQVDSELSKMKVMTAEEAAIAAARAVAEAEAAIAEAERAAREAEEAEAEAESAQVFAEAAMKALECRTFPSRSPVQKVLLQALAFIALMSGIIGLAMYSEKMKVLLAAAFPCASDCN 357
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
10 2853798 2859512 - Cp4.1LG10g02110.1 Cpe10g00484 476021
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cpe10g00484 357 PANTHER TELOMERE REPEAT-BINDING FACTOR 2 20 308 - -
Cpe10g00484 357 Gene3D - 133 213 IPR036388 -
Cpe10g00484 357 ProSiteProfiles Myb-like domain profile. 24 76 IPR001005 -
Cpe10g00484 357 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 24 80 IPR017930 -
Cpe10g00484 357 PANTHER SINGLE MYB HISTONE 4 20 308 IPR044597 GO:0003691
Cpe10g00484 357 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 137 205 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cpe10g00484 357 SUPERFAMILY Winged helix DNA-binding domain 135 213 IPR036390 -
Cpe10g00484 357 Pfam Myb-like DNA-binding domain 24 75 IPR001005 -
Cpe10g00484 357 SMART sant 23 78 IPR001005 -
Cpe10g00484 357 Pfam linker histone H1 and H5 family 142 199 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cpe10g00484 357 CDD SANT_TRF 25 76 - -
Cpe10g00484 357 SMART h15plus2 133 200 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cpe10g00484 357 Coils Coil 259 296 - -
Cpe10g00484 357 SUPERFAMILY Homeodomain-like 21 84 IPR009057 -
Cpe10g00484 357 Gene3D - 19 78 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe10g00484 Cpe-Chr10:2853798 Cpe16g00687 Cpe-Chr16:7120361 3.83E-07 dispersed
Cpe01g00396 Cpe-Chr1:2296937 Cpe10g00484 Cpe-Chr10:2853798 2.15E-57 wgd
Cpe10g00484 Cpe-Chr10:2853798 Cpe14g00260 Cpe-Chr14:1500414 9.00E-69 wgd
Cpe10g00484 Cpe-Chr10:2853798 Cpe19g00677 Cpe-Chr19:5373858 4.64E-103 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50111 PF00538 Linker_histone 1.00E-10 CL0123 Cpe TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe10g00484 K09422 - csv:101202913 465.692