Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe10g00484 | ATGGTGTACGCTACAAATGCTGCAAAAATTGTTGCAGTGTCGAGTGGACATTTGCAAATGGGTGCGCCAAAGCAAAAATGGACAGCTGAAGAAGAAGCTGCCCTTAAAGCAGGAGTGATCAAGCATGGAGCAGGCAAATGGCGCACAATACTCACGGATCCTGAGTTCAGCTCAATTTTGCATCAACGCTCAAATGTGGATCTCAAGGATAAGTGGAGAAATATAAATGTTACTGCAATATGGGGGTCTAGGCAAAAAGCCAAGCTCGCACTTAAAAAGAATTCTTTGGCCCTAAAACATCATGATAATCCTATGGCTCTAAGCACCATGCTTCAGAATGAGGAGATTGTTGACGCTAAGCCACTTGCAATTTCGAATGGAACAACTCGCACTAATGCCCCAAAAGAGCCACTAGCAAGATTGGACAGACTTATATCAGAGGCGATTAACAACTTAAAGGAGCCAAGAGGTTCTGACCGGGCTGCAATTGCTCTGTACATAGAGGAACATTACTGGGCTCCACCAAACCTTAAAAAACTCCTTTCAACAAAATTAAAGCATATGACTGCAAATGGAAAGTTGATAAAGGTAAAGCATAAGTACAGAATTGCTCCAAATTCTGCCTTATCTGGAAGAAGAAATGTTCCATTGTTACTCCTTGAGAACAAGCACTTGGATTCTTCAAAGGCCGAGAAGAGTGAAGTCAAAATCATCACTAAATCCCAGGTTGACTCGGAACTTTCAAAGATGAAGGTAATGACTGCAGAGGAGGCAGCTATAGCTGCTGCACGTGCAGTCGCTGAGGCAGAGGCTGCCATTGCAGAGGCTGAAAGGGCAGCAAGGGAAGCAGAAGAAGCAGAGGCTGAAGCTGAATCAGCACAAGTTTTTGCTGAAGCAGCAATGAAGGCGTTGGAGTGCAGAACATTCCCTAGTAGAAGTCCTGTTCAGAAAGTTCTTCTCCAAGCACTTGCTTTTATTGCATTGATGTCTGGCATTATTGGACTTGCAATGTATTCTGAGAAGATGAAGGTGCTGCTGGCTGCTGCATTTCCATGTGCAAGTGATTGTAACTAA | 1074 | 43.85 | MVYATNAAKIVAVSSGHLQMGAPKQKWTAEEEAALKAGVIKHGAGKWRTILTDPEFSSILHQRSNVDLKDKWRNINVTAIWGSRQKAKLALKKNSLALKHHDNPMALSTMLQNEEIVDAKPLAISNGTTRTNAPKEPLARLDRLISEAINNLKEPRGSDRAAIALYIEEHYWAPPNLKKLLSTKLKHMTANGKLIKVKHKYRIAPNSALSGRRNVPLLLLENKHLDSSKAEKSEVKIITKSQVDSELSKMKVMTAEEAAIAAARAVAEAEAAIAEAERAAREAEEAEAEAESAQVFAEAAMKALECRTFPSRSPVQKVLLQALAFIALMSGIIGLAMYSEKMKVLLAAAFPCASDCN | 357 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 2853798 | 2859512 | - | Cp4.1LG10g02110.1 | Cpe10g00484 | 476021 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe10g00484 | 357 | PANTHER | TELOMERE REPEAT-BINDING FACTOR 2 | 20 | 308 | - | - | |
Cpe10g00484 | 357 | Gene3D | - | 133 | 213 | IPR036388 | - | |
Cpe10g00484 | 357 | ProSiteProfiles | Myb-like domain profile. | 24 | 76 | IPR001005 | - | |
Cpe10g00484 | 357 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 24 | 80 | IPR017930 | - | |
Cpe10g00484 | 357 | PANTHER | SINGLE MYB HISTONE 4 | 20 | 308 | IPR044597 | GO:0003691 | |
Cpe10g00484 | 357 | ProSiteProfiles | Linker histone H1/H5 globular (H15) domain profile. | 137 | 205 | IPR005818 | GO:0000786|GO:0003677|GO:0006334 | |
Cpe10g00484 | 357 | SUPERFAMILY | Winged helix DNA-binding domain | 135 | 213 | IPR036390 | - | |
Cpe10g00484 | 357 | Pfam | Myb-like DNA-binding domain | 24 | 75 | IPR001005 | - | |
Cpe10g00484 | 357 | SMART | sant | 23 | 78 | IPR001005 | - | |
Cpe10g00484 | 357 | Pfam | linker histone H1 and H5 family | 142 | 199 | IPR005818 | GO:0000786|GO:0003677|GO:0006334 | |
Cpe10g00484 | 357 | CDD | SANT_TRF | 25 | 76 | - | - | |
Cpe10g00484 | 357 | SMART | h15plus2 | 133 | 200 | IPR005818 | GO:0000786|GO:0003677|GO:0006334 | |
Cpe10g00484 | 357 | Coils | Coil | 259 | 296 | - | - | |
Cpe10g00484 | 357 | SUPERFAMILY | Homeodomain-like | 21 | 84 | IPR009057 | - | |
Cpe10g00484 | 357 | Gene3D | - | 19 | 78 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe10g00484 | Cpe-Chr10:2853798 | Cpe16g00687 | Cpe-Chr16:7120361 | 3.83E-07 | dispersed | |
Cpe01g00396 | Cpe-Chr1:2296937 | Cpe10g00484 | Cpe-Chr10:2853798 | 2.15E-57 | wgd | |
Cpe10g00484 | Cpe-Chr10:2853798 | Cpe14g00260 | Cpe-Chr14:1500414 | 9.00E-69 | wgd | |
Cpe10g00484 | Cpe-Chr10:2853798 | Cpe19g00677 | Cpe-Chr19:5373858 | 4.64E-103 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
50111 | PF00538 | Linker_histone | 1.00E-10 | CL0123 | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe10g00484 | K09422 | - | csv:101202913 | 465.692 |