Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe10g00484 ATGGTGTACGCTACAAATGCTGCAAAAATTGTTGCAGTGTCGAGTGGACATTTGCAAATGGGTGCGCCAAAGCAAAAATGGACAGCTGAAGAAGAAGCTGCCCTTAAAGCAGGAGTGATCAAGCATGGAGCAGGCAAATGGCGCACAATACTCACGGATCCTGAGTTCAGCTCAATTTTGCATCAACGCTCAAATGTGGATCTCAAGGATAAGTGGAGAAATATAAATGTTACTGCAATATGGGGGTCTAGGCAAAAAGCCAAGCTCGCACTTAAAAAGAATTCTTTGGCCCTAAAACATCATGATAATCCTATGGCTCTAAGCACCATGCTTCAGAATGAGGAGATTGTTGACGCTAAGCCACTTGCAATTTCGAATGGAACAACTCGCACTAATGCCCCAAAAGAGCCACTAGCAAGATTGGACAGACTTATATCAGAGGCGATTAACAACTTAAAGGAGCCAAGAGGTTCTGACCGGGCTGCAATTGCTCTGTACATAGAGGAACATTACTGGGCTCCACCAAACCTTAAAAAACTCCTTTCAACAAAATTAAAGCATATGACTGCAAATGGAAAGTTGATAAAGGTAAAGCATAAGTACAGAATTGCTCCAAATTCTGCCTTATCTGGAAGAAGAAATGTTCCATTGTTACTCCTTGAGAACAAGCACTTGGATTCTTCAAAGGCCGAGAAGAGTGAAGTCAAAATCATCACTAAATCCCAGGTTGACTCGGAACTTTCAAAGATGAAGGTAATGACTGCAGAGGAGGCAGCTATAGCTGCTGCACGTGCAGTCGCTGAGGCAGAGGCTGCCATTGCAGAGGCTGAAAGGGCAGCAAGGGAAGCAGAAGAAGCAGAGGCTGAAGCTGAATCAGCACAAGTTTTTGCTGAAGCAGCAATGAAGGCGTTGGAGTGCAGAACATTCCCTAGTAGAAGTCCTGTTCAGAAAGTTCTTCTCCAAGCACTTGCTTTTATTGCATTGATGTCTGGCATTATTGGACTTGCAATGTATTCTGAGAAGATGAAGGTGCTGCTGGCTGCTGCATTTCCATGTGCAAGTGATTGTAACTAA 1074 43.85 MVYATNAAKIVAVSSGHLQMGAPKQKWTAEEEAALKAGVIKHGAGKWRTILTDPEFSSILHQRSNVDLKDKWRNINVTAIWGSRQKAKLALKKNSLALKHHDNPMALSTMLQNEEIVDAKPLAISNGTTRTNAPKEPLARLDRLISEAINNLKEPRGSDRAAIALYIEEHYWAPPNLKKLLSTKLKHMTANGKLIKVKHKYRIAPNSALSGRRNVPLLLLENKHLDSSKAEKSEVKIITKSQVDSELSKMKVMTAEEAAIAAARAVAEAEAAIAEAERAAREAEEAEAEAESAQVFAEAAMKALECRTFPSRSPVQKVLLQALAFIALMSGIIGLAMYSEKMKVLLAAAFPCASDCN 357
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2853798 2859512 - Cp4.1LG10g02110.1 Cpe10g00484 476021

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe10g00484 357 PANTHER TELOMERE REPEAT-BINDING FACTOR 2 20 308 - -
Cpe10g00484 357 Gene3D - 133 213 IPR036388 -
Cpe10g00484 357 ProSiteProfiles Myb-like domain profile. 24 76 IPR001005 -
Cpe10g00484 357 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 24 80 IPR017930 -
Cpe10g00484 357 PANTHER SINGLE MYB HISTONE 4 20 308 IPR044597 GO:0003691
Cpe10g00484 357 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 137 205 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cpe10g00484 357 SUPERFAMILY Winged helix DNA-binding domain 135 213 IPR036390 -
Cpe10g00484 357 Pfam Myb-like DNA-binding domain 24 75 IPR001005 -
Cpe10g00484 357 SMART sant 23 78 IPR001005 -
Cpe10g00484 357 Pfam linker histone H1 and H5 family 142 199 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cpe10g00484 357 CDD SANT_TRF 25 76 - -
Cpe10g00484 357 SMART h15plus2 133 200 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cpe10g00484 357 Coils Coil 259 296 - -
Cpe10g00484 357 SUPERFAMILY Homeodomain-like 21 84 IPR009057 -
Cpe10g00484 357 Gene3D - 19 78 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe10g00484 K09422 MYBP; transcription factor MYB, plant - csv:101202913 465.692
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe10g00484 Cpe-Chr10:2853798 Cpe16g00687 Cpe-Chr16:7120361 3.83E-07 dispersed
Cpe01g00396 Cpe-Chr1:2296937 Cpe10g00484 Cpe-Chr10:2853798 2.15E-57 wgd
Cpe10g00484 Cpe-Chr10:2853798 Cpe14g00260 Cpe-Chr14:1500414 9.00E-69 wgd
Cpe10g00484 Cpe-Chr10:2853798 Cpe19g00677 Cpe-Chr19:5373858 4.64E-103 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe14g00260 CST 1 248 Single Myb Histone (SMH) Gene Family AT1G49950 57.6 8.6e-67 251.1
Cpe10g00484 . 20 266 Single Myb Histone (SMH) Gene Family AT1G49950 53.5 4.4e-63 238.8
Cpe01g00396 CST 1 232 Single Myb Histone (SMH) Gene Family AT1G49950 55.6 1.3e-59 227.3
Cpe10g00484 . 20 266 Single Myb Histone (SMH) Gene Family AT5G67580 54.0 2.5e-66 249.6
Cpe10g00484 . 20 266 Single Myb Histone (SMH) Gene Family AT3G49850 50.2 6.1e-57 218.4
Cpe03g01057 . 1 269 Single Myb Histone (SMH) Gene Family AT1G17520 51.7 1.7e-67 253.4
Cpe02g01732 . 1 272 Single Myb Histone (SMH) Gene Family AT1G17520 51.4 2.2e-67 253.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003466 1 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 2 1 4 4 0 45
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50111 PF00538 Linker_histone 1.00E-10 CL0123 Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe10g00484 Cpe_Chr10 FPKM 0.426789 0.736043 0.150285 0.254027 2.42227 2.811427 2.331022 0.177878 0.136111 0.0