Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe10g00499 ATGAATAATGTTAATGGCAACAACTGTGACTGGCTAGGCTTCTCTGTCTCCCCTAACGTTAGCATGGAGCTTTCTTCTTCCTCTGCTACTGCTGTCTCCTCTTCAATTCCTGCAAACCTTTTTCACTCCCCATCACAATTTAACTATGGCATTTGCTATGGCGTCGATGGAGAAAATGGTGGCTTTTATTCACCATTGTCTGCCATGCCACTCAAGTCAGATGGCTCAATTTGTTCAATGGAATCACTCAGCAGGCAGCATCCACAAGTGGCGAGTAGCTCTACTCCAAAACTAGAGGATTTCTTCGGTGGCGCAACTATGGGGTCCCATCACTATGAAAGCAATGGCAGGGAAGCTATGGCTCTCAGCCTCGACAGCATTTTTTGCCATCAAAACCCAACTCATGAGCCCAACAACCAACCCTTTGCGCATTTCTCATCCTTGAGAAGCCGTGAAGGGATGCTTCAAGACTCGAAGGTAATCCTGCCTGATGGGTGCAATCTGCAGCAGCAGCAGCACCCACCAGCAGTGATAGAGACTAAGAATTCTGGTCTGAATTGGGCTGTTCCTAGGAACTATGCTGTCGCTAATAATGGTTCGTTCGAGCAGAAGATGGTGAGTTTCATGAGTGAAAATGGTGGAGAATCTGGTCCCATTAATGCCATGGCTTATGGAGATTTACATTCATTGAGCTTGTCCATGACTATGAGCCCCAGCTCTCAGTCAAGCTGTGTTACAGCCACACAGCATGCTTCACCTGCCTTGGCTGACTGTTCTGCTATGGATACAAAGAAAAGAGGCCATGAGAAGCTTGATCAGAAGCAAATTGTTCATAGGAAGTCTTTAGACACTTTTGGACAGAGAACCTCCCAGTACAGAGGGGTTACAAGGCACAGATGGACGGGTAGGTATGAAGCACATTTGTGGGATAACAGTTGCAAGAAAGAAGGTCAAAGCAGGAAGGGAAGGCAAGGAGGTTATGATATGGAAGAAAAAGCCGCCAGAGCTTATGATCTTGCTGCACTCAAGTATTGGGGACCCTCCACCCACATCAACTCTCCTGTGGAGAACTATCAGAAAGAATTAGAGGAAATGAAGAACATGAGTAGGCAGGAATATGTTGCTCACCTCAGAAGGCAAGCTCATTTTTATCATGTACATCATCAACATGGAAGATGGCAGGCTCGGATTGGGCGAGTTGCTGGTAACAAAGATCTGTATCTTGGGACATTCAGTACTCAAGAGGAAGCAGCCGAAGCCTATGACATAGCAGCCATCAAATTTCGAGGAATGAATGCCGTTACTAATTTCAATATCACGAGGTATGATGTGGAGCGGATCATTGCCAGCAATACCCTTCTTAGTGGCGATCTAGCTAAGAGAAAGCAGCAGCCTGAGTTTGATAATGAATCACTTAGACAAACCCCTCCTACTCACAACAGCAATTCAGAAGCTCTTCATTTGCCCACTCAGAGTAATCAAAGTGAATCAGAATGGAAGATGGCTCTTTATCAGTCGTCGCAACAGCTCATTCCAAAACCACGATTGCCGTCTGCTATAACCGATGATGGATCACAACTCGGAGTCGAAGACTCGGCCAGAATGGGAGCTCATTTCTCCAATGCATCTTCAATTGTGACCAGCTGCAGCTTTAGCAGCTCGAGGGAGGAGAGTCCAGACAAGACGAGCCTTTCAATGGTGTTCGGAATGCCTCAATCGACGTCTAAGCCATTTGCTACCTCTGGTAGTAATATGAACTCCTCCTCCTGGATTGCATCTGCCCAGCAGTTGAGGGCAGCCAATTGTATGAGCCAGTTGCCAGTGTTTGCTGCCTGGTCTGATAGTTGA 1848 46.65 MNNVNGNNCDWLGFSVSPNVSMELSSSSATAVSSSIPANLFHSPSQFNYGICYGVDGENGGFYSPLSAMPLKSDGSICSMESLSRQHPQVASSSTPKLEDFFGGATMGSHHYESNGREAMALSLDSIFCHQNPTHEPNNQPFAHFSSLRSREGMLQDSKVILPDGCNLQQQQHPPAVIETKNSGLNWAVPRNYAVANNGSFEQKMVSFMSENGGESGPINAMAYGDLHSLSLSMTMSPSSQSSCVTATQHASPALADCSAMDTKKRGHEKLDQKQIVHRKSLDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQSRKGRQGGYDMEEKAARAYDLAALKYWGPSTHINSPVENYQKELEEMKNMSRQEYVAHLRRQAHFYHVHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGMNAVTNFNITRYDVERIIASNTLLSGDLAKRKQQPEFDNESLRQTPPTHNSNSEALHLPTQSNQSESEWKMALYQSSQQLIPKPRLPSAITDDGSQLGVEDSARMGAHFSNASSIVTSCSFSSSREESPDKTSLSMVFGMPQSTSKPFATSGSNMNSSSWIASAQQLRAANCMSQLPVFAAWSDS 615
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2922938 2926361 + Cp4.1LG10g01960.1 Cpe10g00499 476036
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe10g00499 615 CDD AP2 290 355 IPR001471 GO:0003700|GO:0006355
Cpe10g00499 615 Gene3D AP2/ERF domain 290 356 IPR036955 GO:0003700|GO:0006355
Cpe10g00499 615 Gene3D AP2/ERF domain 384 440 IPR036955 GO:0003700|GO:0006355
Cpe10g00499 615 MobiDBLite consensus disorder prediction 469 492 - -
Cpe10g00499 615 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 8 613 - -
Cpe10g00499 615 ProSiteProfiles AP2/ERF domain profile. 291 354 IPR001471 GO:0003700|GO:0006355
Cpe10g00499 615 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT 8 613 - -
Cpe10g00499 615 SMART rav1_2 387 444 IPR001471 GO:0003700|GO:0006355
Cpe10g00499 615 SMART rav1_2 291 360 IPR001471 GO:0003700|GO:0006355
Cpe10g00499 615 SUPERFAMILY DNA-binding domain 290 354 IPR016177 GO:0003677
Cpe10g00499 615 Pfam AP2 domain 390 430 IPR001471 GO:0003700|GO:0006355
Cpe10g00499 615 Pfam AP2 domain 291 346 IPR001471 GO:0003700|GO:0006355
Cpe10g00499 615 SUPERFAMILY DNA-binding domain 387 439 IPR016177 GO:0003677
Cpe10g00499 615 CDD AP2 388 440 IPR001471 GO:0003700|GO:0006355
Cpe10g00499 615 ProSiteProfiles AP2/ERF domain profile. 372 438 IPR001471 GO:0003700|GO:0006355
Cpe10g00499 615 PRINTS Ethylene responsive element binding protein signature 420 440 IPR001471 GO:0003700|GO:0006355
Cpe10g00499 615 PRINTS Ethylene responsive element binding protein signature 292 303 IPR001471 GO:0003700|GO:0006355
Cpe10g00499 615 MobiDBLite consensus disorder prediction 459 492 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00238 Cpe-Chr2:1220356 Cpe10g00499 Cpe-Chr10:2922938 1.33E-112 dispersed
Cpe06g00218 Cpe-Chr6:1159931 Cpe10g00499 Cpe-Chr10:2922938 9.49E-34 dispersed
Cpe10g00499 Cpe-Chr10:2922938 Cpe16g00890 Cpe-Chr16:8370460 9.23E-97 dispersed
Cpe10g00499 Cpe-Chr10:2922938 Cpe11g00106 Cpe-Chr11:586597 2.74E-159 wgd
Cpe10g00499 Cpe-Chr10:2922938 Cpe19g00692 Cpe-Chr19:5444619 0 wgd
Cpe10g00499 Cpe-Chr10:2922938 Cpe07g00532 Cpe-Chr7:3517977 1.09E-06 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50115 PF00847 AP2 4.00E-10 CL0081 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe10g00499 K09285 - csv:101203323 1078.16