Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe10g00508 ATGGGTTTTGATGATCTTTCTAATACAGGCCTTCTACTGGGTTTGGGATTACCGCTTCCCTCCAATCCCGCTCTTCTTTCTCACAAACCCAAGAAGCCAGTAGATTTATTCTCTTTTCCCGCCCCCGAATCCGAGCCCTCCTTGACTTTGGGCCTTTCCACACCCGAGACTTACCCGCTACCTGCCCCTGAAACGGCTGATTCATGTCGTCAACCCTCGCCTCACAGTGCGATTTCTTCCTTCTCCGGCGGCAGAGTGAAGCGTGAAAGAGACGTTTCCGGTGAAGATATTGAAGAAGAGAAAGCTTGTTCTCGAGTCAGTGATGAAGATGAAGATGGTTCTATTGCTAGAAAAAAGCTTAGGCTAACTAAAGAACAATCTGCCCTCTTGGAGGACAGCTTCAAACTCCATAGCACCCTCAACCCTAAGCAAAAGCAGGCCTTAGCCAGAGAGTTAAATCTCCGGCCTCGACAAGTTGAAGTTTGGTTCCAGAACAGGAGAGCCAGGACAAAGCTGAAGCAAACAGAGGTAGATTGCGAGTTTCTAAAGAGATGCTGCGAAACACTAACAGACGAAAACAGGAAGCTGCAAAAAGAGCTGCAAGAACTGAAAGCCCTGAAACTAGCGCAGCCCCTGATTATGCAAATGCCAGCGGCGACACTCACCATGTGCCCCTCCTGCGAGCGAACCGGTGGTGGAGCCACCGCCGTTAACGCCGACGGCAATTCCAAGAGCCCATTTTCGATGGCTCTCATGCCCCGGTTTGACAAAGCCTTCACCAAGCCTTCTGCTGCTTGCTAA 801 50.44 MGFDDLSNTGLLLGLGLPLPSNPALLSHKPKKPVDLFSFPAPESEPSLTLGLSTPETYPLPAPETADSCRQPSPHSAISSFSGGRVKRERDVSGEDIEEEKACSRVSDEDEDGSIARKKLRLTKEQSALLEDSFKLHSTLNPKQKQALARELNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCETLTDENRKLQKELQELKALKLAQPLIMQMPAATLTMCPSCERTGGGATAVNADGNSKSPFSMALMPRFDKAFTKPSAAC 266
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2995591 2997426 + Cp4.1LG10g01800.1 Cpe10g00508 476045
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe10g00508 266 Pfam Homeodomain 117 171 IPR001356 GO:0003677
Cpe10g00508 266 MobiDBLite consensus disorder prediction 84 110 - -
Cpe10g00508 266 SUPERFAMILY Homeodomain-like 110 174 IPR009057 -
Cpe10g00508 266 SMART halz 173 216 IPR003106 GO:0006355|GO:0043565
Cpe10g00508 266 ProSiteProfiles 'Homeobox' domain profile. 113 173 IPR001356 GO:0003677
Cpe10g00508 266 MobiDBLite consensus disorder prediction 12 110 - -
Cpe10g00508 266 PANTHER - 1 266 - -
Cpe10g00508 266 ProSitePatterns 'Homeobox' domain signature. 148 171 IPR017970 GO:0000981|GO:0006355
Cpe10g00508 266 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT22 1 266 - -
Cpe10g00508 266 Coils Coil 179 209 - -
Cpe10g00508 266 CDD homeodomain 117 174 IPR001356 GO:0003677
Cpe10g00508 266 Gene3D - 111 178 - -
Cpe10g00508 266 SMART HOX_1 115 177 IPR001356 GO:0003677
Cpe10g00508 266 Pfam Homeobox associated leucine zipper 173 207 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00033 Cpe-Chr1:229314 Cpe10g00508 Cpe-Chr10:2995591 2.82E-50 dispersed
Cpe01g00772 Cpe-Chr1:4505674 Cpe10g00508 Cpe-Chr10:2995591 1.58E-102 dispersed
Cpe02g01596 Cpe-Chr2:13425334 Cpe10g00508 Cpe-Chr10:2995591 2.75E-63 dispersed
Cpe06g00227 Cpe-Chr6:1208283 Cpe10g00508 Cpe-Chr10:2995591 1.01E-13 dispersed
Cpe10g00508 Cpe-Chr10:2995591 Cpe14g00930 Cpe-Chr14:7818059 1.40E-74 dispersed
Cpe13g00382 Cpe-Chr13:4160635 Cpe10g00508 Cpe-Chr10:2995591 8.50E-34 dispersed
Cpe10g00508 Cpe-Chr10:2995591 Cpe19g00701 Cpe-Chr19:5513364 4.25E-145 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50117 PF00046 Homeodomain 5.40E-16 CL0123 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe10g00508 K09338 - csv:101218782 417.157