Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe10g00525 ATGGAGCTCAGTCAACATGGTTTCTTAGAGGAGTTATTAGCTTCCACGCCTTGGTCCTCTTCTTATTCAAATGGCTTCAATGATTTCTTCCAAAATACCTGGAATTTCGGTTGTTTTGATGAAAATCCCCAAATGGGTACCTCTATTTCCCCCCATTTTCCCGCTCTCCAAACTGCTACTGATTTTTCCTTCGCCGACCAATACCTCTACACCAATTTTCTCGAAGGCTTTGCAATGCCGGAGCTCGATTCTTCATCGTACACTAGGAATAACGAAACCCCACCATTCGTTTCGCAAGAAGAAATGAGTAATAAGAACAGTGGGTTCCCTCCGCTGGGGATGGAGGAGGAAGAACTTGGGTTTATGGAGGCTGAAGCGGCTCCAAGTGTGTGCAAAGTGGAAATGGAGCAAATGGGTGGGCGTGAAACTAGTGATTCCAAAATGGGTGTCGCAGAATCCAGGAAAAGAACCAGTAACAAGGCTAAGAAGATTGAAGGACAGCCCTCGAAGAATTTAATGGCGGAAAGAAGAAGAAGGAAGCGGTTGAATGATCGGCTTTCCATGCTCAGAGCAATAGTCCCTAAAATAAGCAAGATGGATAGAACGTCTATACTTGGAGACACGATCGATTATGTGAAAGAGCTGCTAGAAAGAATCAATAACTTGAAAGAAGAAGATGAATTTGGTTTAGATTCGAATCACGTGGGCTTCAATGGGATCTCCAAGGAAGGGAAGCCCAATGAAGTTCAAGTGAGAAATTCCCCAAAGTTCGATATTGAAAAGAGGGAGAGTAAGACTCGAATCGACATTTGCTGTGCGACGAGGCCAGGGTTATTGCTGTCCACTGTGAACACATTAGAAGCATTGGGGCTTGAGATTCAACAGTGTGTGATTAGCTGCTTCAATGATTTCTCGATGCAAGCTTGTTGTTCAGAGGGAAGCGGTGAGAAAGCAGTGGCAAGTTCAGATGATGTAAAGGAGGCACTGTTCAGAAATGCAGGATATGGAGGGAAGTGCTTGTAG 1023 44.57 MELSQHGFLEELLASTPWSSSYSNGFNDFFQNTWNFGCFDENPQMGTSISPHFPALQTATDFSFADQYLYTNFLEGFAMPELDSSSYTRNNETPPFVSQEEMSNKNSGFPPLGMEEEELGFMEAEAAPSVCKVEMEQMGGRETSDSKMGVAESRKRTSNKAKKIEGQPSKNLMAERRRRKRLNDRLSMLRAIVPKISKMDRTSILGDTIDYVKELLERINNLKEEDEFGLDSNHVGFNGISKEGKPNEVQVRNSPKFDIEKRESKTRIDICCATRPGLLLSTVNTLEALGLEIQQCVISCFNDFSMQACCSEGSGEKAVASSDDVKEALFRNAGYGGKCL 340
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3080435 3082217 - Cp4.1LG10g01520.1 Cpe10g00525 476062
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe10g00525 340 MobiDBLite consensus disorder prediction 147 167 - -
Cpe10g00525 340 CDD ACT_UUR-ACR-like 266 307 - -
Cpe10g00525 340 Pfam Helix-loop-helix DNA-binding domain 172 215 IPR011598 GO:0046983
Cpe10g00525 340 SMART finulus 172 221 IPR011598 GO:0046983
Cpe10g00525 340 Gene3D - 167 232 IPR036638 GO:0046983
Cpe10g00525 340 MobiDBLite consensus disorder prediction 139 167 - -
Cpe10g00525 340 Coils Coil 205 225 - -
Cpe10g00525 340 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 2 340 - -
Cpe10g00525 340 PANTHER - 2 340 - -
Cpe10g00525 340 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 166 215 IPR011598 GO:0046983
Cpe10g00525 340 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 169 227 IPR036638 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe09g00942 Cpe-Chr9:8431363 Cpe10g00525 Cpe-Chr10:3080435 4.27E-36 dispersed
Cpe10g00525 Cpe-Chr10:3080435 Cpe11g00494 Cpe-Chr11:2865517 1.13E-78 wgd
Cpe10g00525 Cpe-Chr10:3080435 Cpe19g00722 Cpe-Chr19:5635671 1.91E-179 wgd
Cpe10g00525 Cpe-Chr10:3080435 Cpe02g00490 Cpe-Chr2:2842059 4.99E-67 wgd
Cpe10g00525 Cpe-Chr10:3080435 Cpe06g00467 Cpe-Chr6:2750571 6.46E-72 wgd
Cpe10g00525 Cpe-Chr10:3080435 Cpe07g00150 Cpe-Chr7:849756 4.43E-12 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50120 PF00010 HLH 1.90E-09 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe10g00525 - - csv:101205974 578.941