Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe10g00528 ATGGGTCGAGGGAAGATTGTGATAAGAAGGATCGATAATTCAGCGAGCAGACAAGTGACCTTCTCCAAGAGGAGGAAGGGACTTATTAAAAAGGCTAAAGAGCTCTCTATTCTCTGCGATGCCGAACTTGCTCTCATTATCTTCTCCAGCTCTGGCAAACAGTATGAATTTGCAAGCACTAGCATAGAGTCGGTAATTGAGAAATATAATACACGAAAGGAGGAAGATGAACTGCTCTTGAATCCAATTTCTGATGTCAAGAAGGAAGTATCAGCTCTAAGGCAACAACTACTTAAGTTGCAGGAGAATAATAGGAAATTAATGGGGGAGCAACTCTATGGTTTATCAATTAAAGACCTAAACAGTCTCGAGAGCCAATTAGAGTTCAGCTTACAAAGCATCCGAATTAAAAAGGAACAGATATTAAACGATGAAATAAAAGAATTGAACCGAAAGGGAATTCTGATGCACCAACAAAATGTAGAGCTGGCCAATAAAGTAAACCTCTTTTGTCAAGAAAACATTGAATTGCACAGAAAGGTTTACGGGCATGATTCAAGATCAGAGATGAGCGTGGCCACCGGAAACCCCTTGATTCCGTATGGTATTATCAGCGCCGCCGCCGCTGGCCCAATTGGAGGCGACGCCGGCCTGCGTATGCCAATCCACCTTCAGCTCAGCCCGCGAGAGCAATGA 696 43.39 MGRGKIVIRRIDNSASRQVTFSKRRKGLIKKAKELSILCDAELALIIFSSSGKQYEFASTSIESVIEKYNTRKEEDELLLNPISDVKKEVSALRQQLLKLQENNRKLMGEQLYGLSIKDLNSLESQLEFSLQSIRIKKEQILNDEIKELNRKGILMHQQNVELANKVNLFCQENIELHRKVYGHDSRSEMSVATGNPLIPYGIISAAAAGPIGGDAGLRMPIHLQLSPREQ 231
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3096610 3098220 - Cp4.1LG10g01570.1 Cpe10g00528 476065
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe10g00528 231 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cpe10g00528 231 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cpe10g00528 231 ProSiteProfiles K-box domain profile. 83 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cpe10g00528 231 PANTHER MADS-BOX TRANSCRIPTION FACTOR 23 ISOFORM X1 1 203 - -
Cpe10g00528 231 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Cpe10g00528 231 Gene3D - 13 105 IPR036879 GO:0003677|GO:0046983
Cpe10g00528 231 Coils Coil 83 110 - -
Cpe10g00528 231 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 203 - -
Cpe10g00528 231 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cpe10g00528 231 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cpe10g00528 231 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cpe10g00528 231 SUPERFAMILY SRF-like 2 76 IPR036879 GO:0003677|GO:0046983
Cpe10g00528 231 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Cpe10g00528 231 Pfam K-box region 86 167 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe10g00528 Cpe-Chr10:3096610 Cpe10g00122 Cpe-Chr10:785283 1.86E-43 dispersed
Cpe20g00649 Cpe-Chr20:4126525 Cpe10g00528 Cpe-Chr10:3096610 1.06E-12 dispersed
Cpe09g00664 Cpe-Chr9:5459370 Cpe10g00528 Cpe-Chr10:3096610 4.56E-12 transposed
Cpe01g00370 Cpe-Chr1:2125778 Cpe10g00528 Cpe-Chr10:3096610 6.28E-75 wgd
Cpe10g00528 Cpe-Chr10:3096610 Cpe14g00235 Cpe-Chr14:1356557 5.22E-22 wgd
Cpe10g00528 Cpe-Chr10:3096610 Cpe02g00486 Cpe-Chr2:2793523 2.66E-78 wgd
Cpe10g00528 Cpe-Chr10:3096610 Cpe06g00463 Cpe-Chr6:2711981 4.94E-35 wgd
Cpe10g00528 Cpe-Chr10:3096610 Cpe07g00167 Cpe-Chr7:992248 1.29E-35 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50121 PF01486 K-box 6.70E-21 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe10g00528 K09264 - csv:101206453 365.925