Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe10g00530 ATGGCGAAATCACCGGCCGAAGAGCACCCTAATAAGGCTTTTGGATGGGCTGCCAGAGATACCTCCGGCGTTCTTTCTCCATTTAATTTCTCCCGAAGAGAAACAGGGGACAATGATGTAGCTTTTAAAGTTCTTTACTGTGGGATATGCCATTCTGATCTTCACATGTTGAAAAACGAGTGGGGCAATACCATTTACCCTATTGTTCCTGGGCATGAAATCGCGGGTGAGGTAACAGAGGTTGGAAGCAAAGTAAAGAATTTCAAGGTTGGAGACAGAGTGGGCGTAGGATGTATGGTTGGATCCTGCCGCTCCTGTGATAGCTGTTCCAACGACCTTGAGAACTATTGCCCAAAAATGATTCTCACCTACTCCGCCAAGGACTCCGATGGCACCATAACCTACGGTGGCTACTCCGACTGTATGGTCGCCAACGAGCACTTCATTGTTCGCATTCCTGACAGCATCCCTCTGCACGCCGGGGCTCCGCTGCTTTGCGCTGGTATCACGGTTTACAGCCCCTTGCGATACTATGGACTTGACAAGCCTGGAATGAAAATCGGCGTGGTTGGCCTCGGAGGGCTTGGCCATGTAGCTGTCAAATTTGCCAAGGCCCTTGGCGCTAAGGTCACTGTGATTAGCACCTCGCCTAACAAGAAGCAGGAGGCTATTGAACGTCTTGGAGCTGATTCATTCTTGGTCAGCCGTGATCAAGAGCAGATGCAGGCTGCTAAGGGGACGTTGGATGGTATCATAGACACAGTCTCTGCCTCACATCCCCTGCTTCCTCTGCTTTCTCTTGTGAAAACACATGGAAAGTTTGTTCTGGTCGGTGCACCAGAGAAGCCTCTCGAGGTCCCAGCCTTCGCTCTTATTGGGGGTAGGAAAACACTGTCGGGTAGTTGCATTGGAGGGATTAAGGAAACGCAAGAGATGATTGATTTTGCGGCCAAACACAACATAACTGCGGATGTTGAGGTGATTCCGATAGCCGATGTCAACACCGCCATGGAGCGTATGATAAAACAGGATGTCAAATATCGATTCGTCATCGACATTGGCAACACAATGAAGCCTAGCACTTAA 1086 49.63 MAKSPAEEHPNKAFGWAARDTSGVLSPFNFSRRETGDNDVAFKVLYCGICHSDLHMLKNEWGNTIYPIVPGHEIAGEVTEVGSKVKNFKVGDRVGVGCMVGSCRSCDSCSNDLENYCPKMILTYSAKDSDGTITYGGYSDCMVANEHFIVRIPDSIPLHAGAPLLCAGITVYSPLRYYGLDKPGMKIGVVGLGGLGHVAVKFAKALGAKVTVISTSPNKKQEAIERLGADSFLVSRDQEQMQAAKGTLDGIIDTVSASHPLLPLLSLVKTHGKFVLVGAPEKPLEVPAFALIGGRKTLSGSCIGGIKETQEMIDFAAKHNITADVEVIPIADVNTAMERMIKQDVKYRFVIDIGNTMKPST 361
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3105169 3107566 - Cp4.1LG10g01530.1 Cpe10g00530 476067

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe10g00530 361 SUPERFAMILY GroES-like 20 184 IPR011032 -
Cpe10g00530 361 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 157 321 IPR036291 -
Cpe10g00530 361 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 71 85 IPR002328 GO:0008270|GO:0016491
Cpe10g00530 361 CDD CAD1 14 352 - -
Cpe10g00530 361 PANTHER LOW QUALITY PROTEIN: 8-HYDROXYGERANIOL DEHYDROGENASE-LIKE 2 359 - -
Cpe10g00530 361 Pfam Zinc-binding dehydrogenase 194 317 IPR013149 -
Cpe10g00530 361 Pfam Alcohol dehydrogenase GroES-like domain 38 151 IPR013154 -
Cpe10g00530 361 Gene3D - 167 323 - -
Cpe10g00530 361 SMART PKS_ER_names_mod 23 351 IPR020843 GO:0016491
Cpe10g00530 361 Gene3D - 16 353 - -
Cpe10g00530 361 PANTHER ALDEHYDE REDUCTASE 2 359 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe10g00530 - - K23232 csv:101222715 671.003
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00059 Cpe-Chr2:305614 Cpe10g00530 Cpe-Chr10:3105169 4.57E-139 dispersed
Cpe05g00755 Cpe-Chr5:4663821 Cpe10g00530 Cpe-Chr10:3105169 4.51E-112 dispersed
Cpe05g01099 Cpe-Chr5:7330666 Cpe10g00530 Cpe-Chr10:3105169 3.76E-112 dispersed
Cpe10g00530 Cpe-Chr10:3105169 Cpe16g00065 Cpe-Chr16:1275558 3.97E-152 dispersed
Cpe01g00421 Cpe-Chr1:2441840 Cpe10g00530 Cpe-Chr10:3105169 1.60E-114 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe05g01008 CCT 1 503 Monolignol Biosynthesis Gene Families AT2G30490 86.7 1.0e-261 899.4
Cpe16g00690 CCT,CST 1 503 Monolignol Biosynthesis Gene Families AT2G30490 85.7 3.2e-260 894.4
Cpe02g01119 CCT,CST 1 530 Monolignol Biosynthesis Gene Families AT2G30490 74.2 5.2e-234 807.4
Cpe11g00652 . 948 1426 Monolignol Biosynthesis Gene Families AT2G30490 63.4 7.2e-183 637.5
Cpe04g00104 . 15 501 Monolignol Biosynthesis Gene Families AT4G36220 66.1 2.0e-196 682.6
Cpe19g00843 . 2 300 Monolignol Biosynthesis Gene Families AT4G36220 67.0 1.6e-113 407.1
Cpe03g00440 . 5 508 Monolignol Biosynthesis Gene Families AT2G40890 79.2 3.5e-246 847.8
Cpe06g00035 . 11 244 Monolignol Biosynthesis Gene Families AT1G20510 67.4 1.1e-84 311.2
Cpe02g01315 . 1 507 Monolignol Biosynthesis Gene Families AT4G05160 58.6 1.0e-179 627.1
Cpe20g00318 CCT,ECH 24 531 Monolignol Biosynthesis Gene Families AT5G63380 57.2 9.2e-163 570.9
Cpe09g00974 CCT,ECH 28 497 Monolignol Biosynthesis Gene Families AT5G63380 52.4 6.8e-142 501.5
Cpe06g00035 . 11 244 Monolignol Biosynthesis Gene Families AT1G20510 67.4 1.1e-84 311.2
Cpe06g00035 . 11 244 Monolignol Biosynthesis Gene Families AT5G38120 54.9 1.4e-63 241.1
Cpe15g00179 . 29 538 Monolignol Biosynthesis Gene Families AT4G19010 56.5 2.5e-168 589.3
Cpe05g01008 CCT 1 503 Monolignol Biosynthesis Gene Families AT2G30490 86.7 1.0e-261 899.4
Cpe16g00690 CCT,CST 1 503 Monolignol Biosynthesis Gene Families AT2G30490 85.7 3.2e-260 894.4
Cpe02g01119 CCT,CST 1 530 Monolignol Biosynthesis Gene Families AT2G30490 74.2 5.2e-234 807.4
Cpe11g00652 . 948 1426 Monolignol Biosynthesis Gene Families AT2G30490 63.4 7.2e-183 637.5
Cpe12g00779 . 1 430 Monolignol Biosynthesis Gene Families AT5G48930 78.3 1.5e-205 712.6
Cpe17g00636 . 1 434 Monolignol Biosynthesis Gene Families AT5G48930 74.8 2.4e-195 678.7
Cpe03g00440 . 5 508 Monolignol Biosynthesis Gene Families AT2G40890 79.2 3.5e-246 847.8
Cpe15g00488 . 9 249 Monolignol Biosynthesis Gene Families AT4G34050 90.9 1.2e-129 459.9
Cpe04g00280 . 9 186 Monolignol Biosynthesis Gene Families AT4G34050 67.6 2.7e-86 315.8
Cpe09g00585 . 324 543 Monolignol Biosynthesis Gene Families AT4G34050 56.4 1.4e-66 250.4
Cpe09g00585 . 91 277 Monolignol Biosynthesis Gene Families AT1G24735 61.5 9.2e-62 233.8
Cpe15g00488 . 63 248 Monolignol Biosynthesis Gene Families AT1G24735 54.3 1.3e-52 203.4
Cpe01g00580 . 74 294 Monolignol Biosynthesis Gene Families AT3G61990 72.9 2.7e-86 315.8
Cpe01g00580 . 74 282 Monolignol Biosynthesis Gene Families AT3G62000 73.7 4.1e-84 308.9
Cpe09g00585 . 911 1139 Monolignol Biosynthesis Gene Families AT1G67990 61.6 6.4e-78 287.7
Cpe15g00488 . 23 248 Monolignol Biosynthesis Gene Families AT1G67990 52.6 6.9e-64 241.1
Cpe09g00585 . 114 277 Monolignol Biosynthesis Gene Families AT1G67980 54.9 1.6e-43 172.9
Cpe15g00488 . 23 248 Monolignol Biosynthesis Gene Families AT4G26220 60.2 9.3e-77 283.9
Cpe09g00585 . 322 542 Monolignol Biosynthesis Gene Families AT4G26220 54.2 3.1e-64 242.3
Cpe12g00773 . 127 347 Monolignol Biosynthesis Gene Families AT1G15950 81.9 8.8e-102 367.1
Cpe03g00914 . 100 321 Monolignol Biosynthesis Gene Families AT1G15950 72.1 1.8e-91 332.8
Cpe02g01619 . 77 287 Monolignol Biosynthesis Gene Families AT1G15950 69.3 1.5e-80 296.6
Cpe03g00913 . 96 267 Monolignol Biosynthesis Gene Families AT1G15950 69.8 2.4e-67 252.7
Cpe12g00773 . 29 304 Monolignol Biosynthesis Gene Families AT1G80820 75.0 1.8e-119 426.0
Cpe03g00914 . 8 275 Monolignol Biosynthesis Gene Families AT1G80820 74.3 3.4e-115 411.8
Cpe02g01619 . 299 550 Monolignol Biosynthesis Gene Families AT1G80820 68.4 8.2e-101 364.0
Cpe03g00915 . 42 385 Monolignol Biosynthesis Gene Families AT1G80820 53.0 1.7e-90 329.7
Cpe03g00913 . 9 221 Monolignol Biosynthesis Gene Families AT1G80820 57.4 1.5e-81 300.1
Cpe04g00104 . 15 501 Monolignol Biosynthesis Gene Families AT4G36220 66.1 2.0e-196 682.6
Cpe19g00843 . 2 300 Monolignol Biosynthesis Gene Families AT4G36220 67.0 1.6e-113 407.1
Cpe04g00104 . 27 501 Monolignol Biosynthesis Gene Families AT5G04330 58.4 1.1e-165 580.5
Cpe19g00843 . 1 300 Monolignol Biosynthesis Gene Families AT5G04330 56.2 2.3e-88 323.6
Cpe09g00009 . 5 374 Monolignol Biosynthesis Gene Families AT5G54160 71.9 5.6e-153 537.7
Cpe08g00826 . 322 663 Monolignol Biosynthesis Gene Families AT5G54160 54.1 6.0e-107 384.8
Cpe16g00065 . 33 333 Monolignol Biosynthesis Gene Families AT4G39330 72.1 2.7e-132 468.8
Cpe10g00530 . 1 301 Monolignol Biosynthesis Gene Families AT4G39330 62.5 5.7e-114 407.9
Cpe02g00059 . 8 304 Monolignol Biosynthesis Gene Families AT4G39330 56.2 2.3e-99 359.4
Cpe05g01099 . 1039 1259 Monolignol Biosynthesis Gene Families AT4G39330 64.5 1.2e-90 330.5
Cpe05g00755 . 12 298 Monolignol Biosynthesis Gene Families AT4G39330 50.7 1.4e-75 280.4
Cpe01g00421 . 55 409 Monolignol Biosynthesis Gene Families AT3G19450 75.0 2.6e-158 555.4
Cpe14g00281 . 88 444 Monolignol Biosynthesis Gene Families AT3G19450 74.0 2.9e-157 552.0
Cpe16g00065 . 44 388 Monolignol Biosynthesis Gene Families AT3G19450 50.4 7.4e-105 377.9
Cpe10g00530 . 12 356 Monolignol Biosynthesis Gene Families AT3G19450 52.2 5.9e-102 368.2
Cpe10g00530 . 4 294 Monolignol Biosynthesis Gene Families AT4G37970 61.5 7.6e-108 387.5
Cpe16g00065 . 36 329 Monolignol Biosynthesis Gene Families AT4G37970 59.2 5.1e-104 374.8
Cpe02g00059 . 14 294 Monolignol Biosynthesis Gene Families AT4G37970 54.8 2.2e-91 332.8
Cpe14g00281 . 89 378 Monolignol Biosynthesis Gene Families AT4G37970 50.7 1.2e-81 300.4
Cpe10g00530 . 12 294 Monolignol Biosynthesis Gene Families AT4G37980 71.7 3.6e-118 421.8
Cpe16g00065 . 393 668 Monolignol Biosynthesis Gene Families AT4G37980 62.8 4.3e-103 371.7
Cpe02g00059 . 14 294 Monolignol Biosynthesis Gene Families AT4G37980 55.9 1.0e-88 323.9
Cpe14g00281 . 94 375 Monolignol Biosynthesis Gene Families AT4G37980 52.3 3.0e-80 295.8
Cpe01g00421 . 55 336 Monolignol Biosynthesis Gene Families AT4G37980 51.1 3.7e-78 288.9
Cpe05g01099 . 1039 1255 Monolignol Biosynthesis Gene Families AT4G37980 55.7 1.1e-74 277.3
Cpe05g00755 . 8 280 Monolignol Biosynthesis Gene Families AT4G37980 50.2 9.4e-74 274.2
Cpe10g00530 . 12 360 Monolignol Biosynthesis Gene Families AT4G37990 70.8 1.0e-143 506.9
Cpe16g00065 . 44 390 Monolignol Biosynthesis Gene Families AT4G37990 63.4 2.9e-130 462.2
Cpe02g00059 . 14 354 Monolignol Biosynthesis Gene Families AT4G37990 57.5 6.6e-114 407.9
Cpe01g00421 . 61 410 Monolignol Biosynthesis Gene Families AT4G37990 53.4 1.5e-105 380.2
Cpe14g00281 . 99 443 Monolignol Biosynthesis Gene Families AT4G37990 53.0 8.0e-104 374.4
Cpe05g01099 . 1039 1316 Monolignol Biosynthesis Gene Families AT4G37990 61.3 1.4e-103 373.6
Cpe01g00421 . 55 409 Monolignol Biosynthesis Gene Families AT4G34230 77.5 1.5e-163 572.8
Cpe14g00281 . 88 442 Monolignol Biosynthesis Gene Families AT4G34230 74.4 1.9e-158 555.8
Cpe16g00065 . 390 727 Monolignol Biosynthesis Gene Families AT2G21730 71.1 9.8e-145 510.4
Cpe10g00530 . 11 361 Monolignol Biosynthesis Gene Families AT2G21730 61.5 2.1e-131 466.1
Cpe02g00059 . 14 354 Monolignol Biosynthesis Gene Families AT2G21730 58.2 8.7e-117 417.5
Cpe05g01099 . 1039 1314 Monolignol Biosynthesis Gene Families AT2G21730 63.0 2.5e-108 389.4
Cpe01g00421 . 60 411 Monolignol Biosynthesis Gene Families AT2G21730 51.1 7.9e-102 367.9
Cpe14g00281 . 99 444 Monolignol Biosynthesis Gene Families AT2G21730 50.6 7.9e-102 367.9
Cpe16g00065 . 390 727 Monolignol Biosynthesis Gene Families AT2G21890 70.1 7.0e-143 504.2
Cpe10g00530 . 11 361 Monolignol Biosynthesis Gene Families AT2G21890 61.1 1.1e-130 463.8
Cpe02g00059 . 14 354 Monolignol Biosynthesis Gene Families AT2G21890 57.8 1.5e-116 416.8
Cpe05g01099 . 1039 1314 Monolignol Biosynthesis Gene Families AT2G21890 62.5 3.6e-107 385.6
Cpe01g00421 . 60 411 Monolignol Biosynthesis Gene Families AT2G21890 51.3 5.4e-103 371.7
Cpe14g00281 . 99 444 Monolignol Biosynthesis Gene Families AT2G21890 50.7 7.1e-103 371.3
Cpe05g00755 . 2 355 Monolignol Biosynthesis Gene Families AT1G72680 75.1 1.9e-161 565.8
Cpe16g00065 . 48 390 Monolignol Biosynthesis Gene Families AT1G72680 54.8 3.9e-103 372.1
Cpe06g00035 . 11 244 Monolignol Biosynthesis Gene Families AT1G20510 67.4 1.1e-84 311.2
Cpe15g00179 . 29 538 Monolignol Biosynthesis Gene Families AT4G19010 56.5 2.5e-168 589.3
Cpe02g01315 . 1 507 Monolignol Biosynthesis Gene Families AT4G05160 58.6 1.0e-179 627.1
Cpe20g00318 CCT,ECH 24 531 Monolignol Biosynthesis Gene Families AT5G63380 57.2 9.2e-163 570.9
Cpe09g00974 CCT,ECH 28 497 Monolignol Biosynthesis Gene Families AT5G63380 52.4 6.8e-142 501.5
Cpe06g00035 . 11 244 Monolignol Biosynthesis Gene Families AT5G38120 54.9 1.4e-63 241.1
Cpe17g00233 . 4 321 Monolignol Biosynthesis Gene Families AT1G76470 57.1 4.6e-98 355.1
Cpe01g00793 CST 7 325 Monolignol Biosynthesis Gene Families AT2G02400 69.9 4.4e-138 488.0
Cpe17g00233 . 1 322 Monolignol Biosynthesis Gene Families AT2G33590 65.6 1.8e-118 422.9
Cpe17g00231 . 10 372 Monolignol Biosynthesis Gene Families AT2G33590 58.0 1.8e-110 396.4
Cpe17g00233 . 4 322 Monolignol Biosynthesis Gene Families AT2G33600 63.8 1.1e-115 413.7
Cpe17g00231 . 13 372 Monolignol Biosynthesis Gene Families AT2G33600 56.5 4.4e-109 391.7
Cpe20g00885 . 5 326 Monolignol Biosynthesis Gene Families AT5G58490 69.6 6.5e-137 484.2
Cpe08g01069 . 10 370 Monolignol Biosynthesis Gene Families AT3G53140 71.9 2.1e-152 535.8
Cpe09g00009 . 189 372 Monolignol Biosynthesis Gene Families AT5G37170 50.5 5.5e-48 188.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000429 7 3 4 6 6 3 3 3 3 2 3 3 3 3 3 3 3 7 2 3 3 3 2 3 4 3 2 4 4 4 105
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe10g00530 Cpe_Chr10 FPKM 0.0 0.0 0.0 0.0 5.786604 0.0 0.0 0.0 0.0 0.0