Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe10g00536 ATGGAAGTGGAGCTTTTCACTTCCTTTCACGCCTCATTGGTGGCTTTCCATATTTCTGAAAAACTAACCCTAACCGCTCATTCTTCTTTTCGATCTGTGACTACGACTCTTTCTTCCTTCGAGGTTGAAATGGCGAAAGAGAGAATCCAGATCAGGAAGATCGATAACGCTACGGCGAGACAAGTCACCTTCTCCAAGCGCCGGAGGGGACTGTTTAAGAAAGCAAAAGAGCTATCCGTTCTATGCGATGCCGATGTCGCCCTCATTGTCTTCTCCGCTACCGGAAAGCTGTTTGAATTCTCCAGCTCAAGCATGAAGGGAATCATAGAAAGACATAATTTGCACTCTAAGAACCTTCAGAAATTGGAACAACCATCCCTTGAACTACAGCTGGTTGAAAACAGCAATTACACCCGACTAAACAAGGAAATTGCTGAGAAAACTCAGCAGCTAAGGCAGATGAGGGGAGAAGAGCTCCAAACATTGAATATAGAGGAACTGCAGCAGCTAGAGAAGTCATTGGAGTGTGGATTGAGCCGTGTGATGGAGAAAAAGGGCGAACGAATCATGACAGAAATATCTGATCTTCAAAGAAAGTCGGCTGAGTTGATGGAAGAGAATAGGCGACTGAAACAAGCGCAAAAAATGAATTGCGTGAGGAACCTTGGCGTTGAGCCGGAGAATTTGGTCGTGGAAGATGGCCAGTCGTCGAACTCCGTCACTGAAGCTTGTGTCTCCAACTCCAATGGCCCGCCTCAAGATCTGGATAGCTCAGACACATCTCTGAAACTAGGGCTGCCGTATTCCGGGTGA 813 46.62 MEVELFTSFHASLVAFHISEKLTLTAHSSFRSVTTTLSSFEVEMAKERIQIRKIDNATARQVTFSKRRRGLFKKAKELSVLCDADVALIVFSATGKLFEFSSSSMKGIIERHNLHSKNLQKLEQPSLELQLVENSNYTRLNKEIAEKTQQLRQMRGEELQTLNIEELQQLEKSLECGLSRVMEKKGERIMTEISDLQRKSAELMEENRRLKQAQKMNCVRNLGVEPENLVVEDGQSSNSVTEACVSNSNGPPQDLDSSDTSLKLGLPYSG 270
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3143335 3147402 - Cp4.1LG10g01560.1 Cpe10g00536 476073
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe10g00536 270 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 53 100 IPR002100 GO:0003677|GO:0046983
Cpe10g00536 270 ProSiteProfiles MADS-box domain profile. 44 104 IPR002100 GO:0003677|GO:0046983
Cpe10g00536 270 Coils Coil 186 216 - -
Cpe10g00536 270 PANTHER MADS-BOX PROTEIN SVP ISOFORM X1 44 267 - -
Cpe10g00536 270 ProSiteProfiles K-box domain profile. 130 222 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cpe10g00536 270 PANTHER SERUM RESPONSE FACTOR HOMOLOG 44 267 - -
Cpe10g00536 270 Pfam K-box region 135 212 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cpe10g00536 270 SMART madsneu2 44 103 IPR002100 GO:0003677|GO:0046983
Cpe10g00536 270 CDD MADS_MEF2_like 45 120 IPR033896 GO:0000977|GO:0045944
Cpe10g00536 270 PRINTS MADS domain signature 46 66 IPR002100 GO:0003677|GO:0046983
Cpe10g00536 270 PRINTS MADS domain signature 81 102 IPR002100 GO:0003677|GO:0046983
Cpe10g00536 270 PRINTS MADS domain signature 66 81 IPR002100 GO:0003677|GO:0046983
Cpe10g00536 270 Gene3D - 56 126 IPR036879 GO:0003677|GO:0046983
Cpe10g00536 270 SUPERFAMILY SRF-like 46 128 IPR036879 GO:0003677|GO:0046983
Cpe10g00536 270 Coils Coil 137 157 - -
Cpe10g00536 270 MobiDBLite consensus disorder prediction 232 270 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe10g00536 Cpe-Chr10:3143335 Cpe19g00176 Cpe-Chr19:1423294 3.14E-60 dispersed
Cpe10g00536 Cpe-Chr10:3143335 Cpe14g00230 Cpe-Chr14:1323554 4.19E-40 wgd
Cpe10g00536 Cpe-Chr10:3143335 Cpe19g00738 Cpe-Chr19:5703594 1.66E-65 wgd
Cpe10g00536 Cpe-Chr10:3143335 Cpe07g00167 Cpe-Chr7:992248 3.25E-86 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50123 PF01486 K-box 5.10E-16 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe10g00536 - - csv:101203152 404.831