Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe10g00541 | ATGGCGGATACTTTTTACTGTACACAGAACAACGCCAATACTTGTTTTGATGATCAATTTGATTGTAATGCCACAAATAATAAGGTTGAGCAATGCTCAATTTTTCTGCCCCATACTTTGCTGGGTTTTGCTTTACAGAGTGAAGAGAGGGTGAGAGGAATGGTGGAAAAAGAGATTCAGCATTTGCCTAGCCATGATTATCTTAAGAGACTGCGGAGTGGGGATTTGGATTTGAAGTTTAGGAGAGAAGCTCTTGATTGGATTTGGAAGGCTCATGCCCATTACAGTTTTGGACCTCTCACTCTTTGTCTATCTTTAAACTACTTGGACCGTTTCCTCTCAGTGTATCAATTGCCTATGGATAAAAGCTGGACTGTGCAGTTGCTGTCAGTTGCTTGTGTGTCTCTAGCAGCAAAGATGGAGGAGACAGAAGTACCACTGTCCATAGATTTACAGGTGGAGGAGCCTAAGTTTGTGTTCGAAGCAAAAACGATACAAAGAATGGAGCTTCTGGTTCTAAGCAGGTTGAAATGGAAGATGCATGCCATAACTCCATTTTCTTTCATTGATTATTTCGTGAGTAAGATGAGTGTTGGAGAGCACGTAGCGAGGGTATCCTTGTCAAAATCTTCACAACTCATTCTGAGCACAATTAAAGGCATTGACTTCTTGGAATTCAGGCCTTCTGAAATTGCTTTAGCTGTGGCAATTTCCACTTCAGGAGAATTGCAAGCATCCGACGTCAATAAAGCAATCCTTTCTTTTCCATATATGGAGAAAGAGAGGGTGATGAAGTGCATCGATCTGATAAGAGATGTTTCGTTGATTAGTAATGTAAATACATTGGTTGCTGATAATGTTGCTGGTTCAGTTCCTCAAAGCCCTGTTGGGGTGTTGGATGCAGCTTGTTTGAGCCAAAAACAGAAGAACTATTAA | 936 | 41.03 | MADTFYCTQNNANTCFDDQFDCNATNNKVEQCSIFLPHTLLGFALQSEERVRGMVEKEIQHLPSHDYLKRLRSGDLDLKFRREALDWIWKAHAHYSFGPLTLCLSLNYLDRFLSVYQLPMDKSWTVQLLSVACVSLAAKMEETEVPLSIDLQVEEPKFVFEAKTIQRMELLVLSRLKWKMHAITPFSFIDYFVSKMSVGEHVARVSLSKSSQLILSTIKGIDFLEFRPSEIALAVAISTSGELQASDVNKAILSFPYMEKERVMKCIDLIRDVSLISNVNTLVADNVAGSVPQSPVGVLDAACLSQKQKNY | 311 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 3185468 | 3187954 | + | Cp4.1LG10g01460.1 | Cpe10g00541 | 476078 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe10g00541 | 311 | PANTHER | CYCLINS | 42 | 304 | IPR039361 | - | |
| Cpe10g00541 | 311 | Pfam | Cyclin, N-terminal domain | 54 | 180 | IPR006671 | - | |
| Cpe10g00541 | 311 | ProSitePatterns | Cyclins signature. | 81 | 112 | IPR006671 | - | |
| Cpe10g00541 | 311 | SUPERFAMILY | Cyclin-like | 43 | 181 | IPR036915 | - | |
| Cpe10g00541 | 311 | Pfam | Cyclin, C-terminal domain | 183 | 276 | IPR004367 | - | |
| Cpe10g00541 | 311 | PANTHER | CYCLIN-D4-1-LIKE | 42 | 304 | - | - | |
| Cpe10g00541 | 311 | CDD | CYCLIN | 81 | 173 | IPR013763 | - | |
| Cpe10g00541 | 311 | SMART | Cyclin_C_2 | 183 | 293 | IPR004367 | - | |
| Cpe10g00541 | 311 | SMART | cyclin_7 | 86 | 174 | IPR013763 | - | |
| Cpe10g00541 | 311 | Gene3D | - | 64 | 181 | - | - | |
| Cpe10g00541 | 311 | Gene3D | - | 54 | 268 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe05g01470 | Cpe-Chr5:10191369 | Cpe10g00541 | Cpe-Chr10:3185468 | 7.76E-41 | dispersed | |
| Cpe10g00541 | Cpe-Chr10:3185468 | Cpe14g00259 | Cpe-Chr14:1489945 | 7.31E-61 | dispersed | |
| Cpe15g00473 | Cpe-Chr15:5737985 | Cpe10g00541 | Cpe-Chr10:3185468 | 2.14E-46 | dispersed | |
| Cpe19g00642 | Cpe-Chr19:5181481 | Cpe10g00541 | Cpe-Chr10:3185468 | 2.24E-47 | dispersed | |
| Cpe01g00427 | Cpe-Chr1:2468894 | Cpe10g00541 | Cpe-Chr10:3185468 | 4.54E-47 | wgd | |
| Cpe10g00541 | Cpe-Chr10:3185468 | Cpe11g00467 | Cpe-Chr11:2638096 | 3.35E-87 | wgd | |
| Cpe10g00541 | Cpe-Chr10:3185468 | Cpe19g00744 | Cpe-Chr19:5745874 | 4.39E-166 | wgd | |
| Cpe10g00541 | Cpe-Chr10:3185468 | Cpe07g00182 | Cpe-Chr7:1142682 | 8.43E-84 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe10g00541 | K18810 | - | csv:101209378 | 457.603 |