Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe10g00565 ATGAAATCTGAGGCACTGACATTGATATTGGTGAATCTGGCTGCTATTATGGAGAGGGCCGATGAGTCCCTGTTGCCTGGAGTTTACAAGGAAGTTGGAGCTGCTCTTCACACCGATCCCACTGGCTTGGGATCCCTAACTCTCTTCAGATCTCTAGTTCAGTCTTCTTGTTACCCTTTAGCTGCTTACTTAGCTATGCATCACAACCGCGCCCATGTCATCGCTTTAGGGGCTTTTCTCTGGGCCGCCGCCACTTTTCTCGTCGCCCTTTCCTCCACATTCTTGCAGTCCCTCGTTGCTGATTCCACTGATGATAGCAACCGTGGCTTGGCTTTTGGATGGCTACAACTAACTGGAAATCTTGGTTCGATCATTGGTGGTCTTTCTTCTGTTTTAATGGCCTCCACATCTTTCATGGGAATCCCCGGATGGAGAATTGCCTTCCATCTCGTTGGTCTGATTAGTGTCATAGTTGGTATGCTAGTATGGCTTTTTGCAGACGATCCACGTTTTTCCGAGATTGATGGAACAACAAAGGACCAACCACGCAAGCCATTCTGGTCAGAAATGAAGGATCTAGTTAAAGAAGCAAGGTCAGTTTTAGGGATCCAATCTTTCCAGATAATAGTAGCTCAGGGGGTTGCAGGATCATTTCCCTGGTCGGCTTTGTCGTTTGCTCCTATGTGGCTTGAACTCATCGGCTTTTCTCACGAGAAAACAGGATTTCTTTGGACTCTCTTTATAATTGCTGGTTCATTGGGTGGCCTTTTTGGAGGAAGAATGGGAGATATCTTATCAAAACGCTTTCCCAATTCAGGAAGAATAGTTCTGTCTCAGATAAGCTCAGGTTCTGCCATTCCTCTGGCTGCAATTTTGCTGCTGGTTTTGCCCGACCATCCATCCACAGCGTTCTTGCATGGACTGGTTTTGTTCATAATGGGTTTCAGCATGTCATGGAATTCACCAGCAACTAACAATCCAATATTTGCAGAGATAGTCCCAGAGAAGTCCCGGACGAGCATCTATGCATTGGATCGATCATTTGAGTCGATTCTGTCATCGTTTGCTCCTCCTGTTGTTGGTGTTCTGGCCCAGCATGTGTATGGATATAAGCCAGTTGCAAGAGGATCCTCAGATTCTGCTCAGATTGAAGCTGATAGAGAGAATGCAAAATCACTAGCCAGGGCACTCTATACAGCCATTGGTATTCCAATGTCACTGTGCTGCTTCATCTACTCTTTCCTGTATTGCTCATATCCAAGAGACCGAGAGCGAGCTAGAATGCACGCCCTGATAGACTCTGAAATGCTGCAGCTGGAGTCTACTACTACTATTACTACTATTTCAATGGCAAAAGATGTGGATGATAAGGATCAAGCAGAGATCGACCTTATCTATGAAATTGAAGGCAGTCTTGATTTCAACGACAGCGATGAAAATCATCTTCTTAGTCATCAGCTAACAGTTTCTGATTCTTAA 1479 45.3 MKSEALTLILVNLAAIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSLVQSSCYPLAAYLAMHHNRAHVIALGAFLWAAATFLVALSSTFLQSLVADSTDDSNRGLAFGWLQLTGNLGSIIGGLSSVLMASTSFMGIPGWRIAFHLVGLISVIVGMLVWLFADDPRFSEIDGTTKDQPRKPFWSEMKDLVKEARSVLGIQSFQIIVAQGVAGSFPWSALSFAPMWLELIGFSHEKTGFLWTLFIIAGSLGGLFGGRMGDILSKRFPNSGRIVLSQISSGSAIPLAAILLLVLPDHPSTAFLHGLVLFIMGFSMSWNSPATNNPIFAEIVPEKSRTSIYALDRSFESILSSFAPPVVGVLAQHVYGYKPVARGSSDSAQIEADRENAKSLARALYTAIGIPMSLCCFIYSFLYCSYPRDRERARMHALIDSEMLQLESTTTITTISMAKDVDDKDQAEIDLIYEIEGSLDFNDSDENHLLSHQLTVSDS 492
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3315727 3318625 - Cp4.1LG10g01200.1 Cpe10g00565 476102

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe10g00565 492 Pfam Major Facilitator Superfamily 88 357 IPR011701 GO:0022857|GO:0055085
Cpe10g00565 492 Gene3D MFS general substrate transporter like domains 3 377 IPR036259 -
Cpe10g00565 492 PANTHER - 1 460 - -
Cpe10g00565 492 SUPERFAMILY MFS general substrate transporter 6 421 IPR036259 -
Cpe10g00565 492 CDD MFS_spinster_like 8 412 IPR044770 -
Cpe10g00565 492 PANTHER SPINSTER 1 460 IPR044770 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe10g00565 - - - csv:101211597 811.986
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe10g00565 Cpe19g00768 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00523 Cpe-Chr2:3092834 Cpe10g00565 Cpe-Chr10:3315727 0 dispersed
Cpe06g00507 Cpe-Chr6:3011929 Cpe10g00565 Cpe-Chr10:3315727 0 dispersed
Cpe10g00565 Cpe-Chr10:3315727 Cpe16g00039 Cpe-Chr16:487079 2.57E-99 dispersed
Cpe10g00565 Cpe-Chr10:3315727 Cpe19g00768 Cpe-Chr19:5869262 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g921 . . Bda04g00323 Bda10g00314 . . Bma09g00361 . . . . . . . . Cpe19g00768 Cpe10g00565 . . . . . . . Cla01g01843 Cam01g1930 Cec04g1582 Cco04g1646 Clacu01g1952 Cmu01g1826 Cre04g1504 . . Cone6ag1344 Cone9ag1489 . . . Cme08g00775 . . . . Bpe10g00087 Bpe06g00254 . . . . . . . . . . . . . . . . . . . . . . . . . . Csa06g03164 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001621 1 2 2 2 2 1 4 2 2 2 2 2 3 2 1 4 2 4 4 2 2 2 2 3 3 2 2 2 3 1 68
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe10g00565 Cpe_Chr10 FPKM 0.039162 0.135883 0.750345 1.04029 5.649821 4.849594 6.017063 0.908975 0.826087 0.955088