Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe10g00582 ATGGCGGGTCAACCGTCAGATTCTTCCCCTCTTATTCCACCGCCTCCGATCAGCGACCCCAGTGAGATCGACCTCGAAGCCGGCCAAGGGGAGCAGATACAATGTAGAATTTGCCTCGAGACCGATGGTAGGGATTTTATTGCTCCCTGCAAATGCAAGGGGACATCAAAGTATGTTCATCGAGAATGTCTGGATCATTGGCGGGCTGTGAAGGAAGGGTTTGCTTTTGCTCATTGTACCACATGTAAGGCCCCTTACCATTTGAGAGTACATGCTGTTGCTGACAGGAAATGGCGAACCCTGAAATTTCGATTTTTTGTGACTAGAGATATTGTATTTATATTTTTGGCGGTTCAGCTTGTAATTGCTTCTCTGGGATATTTGACGCATTTTGTAGATGGTTTTCAACATTACTGGCTTCGTCTTACGTGGGGTTTTGATAACAAAATTAGTTTTTATTACATATGTGGAGCTTTATTATTTTTTGCATTGCTCGGCTTGTCTGGATGCTTCATCACTTGTTATGATCGGAGAGTTAGGAATGATTTGGCTCAGCCATGTAGAGAATTGTGTCTATGTTGTTGCCACCCTGGACTATGTGCTGACTGTCATTTGCCTGGTACTCTTTGTATGTGGACTGACTGCACCACTTGCTTCGAAAGTTGTGGAAGCATCGCAACCGAATGCGGATGCCTAGGAGGTGCTGGTGAAGCAGGACTGCCATTATTATTTATAATGGCCTTGATTGTTCTTGGTTTGTTCACAGTGATTGGTATCTTCTACAGCGTCTTGGTAGCTACCATGGTTGGACAACGAATATGGCAACGACACTATCACATACTTGCAAAAAGAATGCTTACAAAGGAATATGTTGTGGAAGATGTAGATGGGGAGATGACAGGATCTGAGTGGTTACCTCCACCACTTCCAGCTGAGCACGTTCAACAACTGAAAACTCTTGGCCTTTTATGA 972 44.24 MAGQPSDSSPLIPPPPISDPSEIDLEAGQGEQIQCRICLETDGRDFIAPCKCKGTSKYVHRECLDHWRAVKEGFAFAHCTTCKAPYHLRVHAVADRKWRTLKFRFFVTRDIVFIFLAVQLVIASLGYLTHFVDGFQHYWLRLTWGFDNKISFYYICGALLFFALLGLSGCFITCYDRRVRNDLAQPCRELCLCCCHPGLCADCHLPGTLCMWTDCTTCFESCGSIATECGCLGGAGEAGLPLLFIMALIVLGLFTVIGIFYSVLVATMVGQRIWQRHYHILAKRMLTKEYVVEDVDGEMTGSEWLPPPLPAEHVQQLKTLGLL 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3390404 3395121 - Cp4.1LG10g01000.1 Cpe10g00582 476119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe10g00582 323 CDD RING_CH-C4HC3_MARCH 35 83 - -
Cpe10g00582 323 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 95 IPR013083 -
Cpe10g00582 323 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 6 323 - -
Cpe10g00582 323 SMART ringv_2 34 83 IPR011016 GO:0008270
Cpe10g00582 323 PANTHER BNAA04G12620D PROTEIN 6 323 - -
Cpe10g00582 323 ProSiteProfiles Zinc finger RING-CH-type profile. 27 89 IPR011016 GO:0008270
Cpe10g00582 323 MobiDBLite consensus disorder prediction 1 23 - -
Cpe10g00582 323 Pfam RING-variant domain 35 82 IPR011016 GO:0008270
Cpe10g00582 323 SUPERFAMILY RING/U-box 31 87 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g01767 Cpe-Chr2:14365585 Cpe10g00582 Cpe-Chr10:3390404 1.43E-11 dispersed
Cpe03g01002 Cpe-Chr3:8210858 Cpe10g00582 Cpe-Chr10:3390404 1.60E-11 dispersed
Cpe04g01175 Cpe-Chr4:10012056 Cpe10g00582 Cpe-Chr10:3390404 1.18E-54 dispersed
Cpe10g00582 Cpe-Chr10:3390404 Cpe02g01349 Cpe-Chr2:11925058 9.12E-06 dispersed
Cpe10g00582 Cpe-Chr10:3390404 Cpe18g00464 Cpe-Chr18:5597500 1.17E-63 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe10g00582 - - csv:101214008 628.246