Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe10g00589 ATGACGGGCAGAGGGTCATCGGGAAGGACGCCGACGTGGAAGGAAAGGGAGAATAATAAGAGGAGGGAGAGGCGTCGGAGGGCCATTGCTGCTAAGATCTACACTGGTCTTAGAGCTCAGGGGAACTATAAGCTTCCTAAACACTGTGATAACAACGAGGTCCTGAAGGCACTCTGTAATGAGGCTGGTTGGGTGGTTGAAGAAGATGGCACCACTTATCGCAAGGGAAGCAAGCCACCTCCGATTGATATTGGCACTACTGCAAACATGAGTGCCTGTTCCTCTCTTCAACCAAGCCCACAATCTTCCTGCTTCCCGAGTCCTGTACCATCCTACCATGCCAGTCCTTCCTCGTCCTCTTTTCCAAGCCCAACTCGATTTGATGGGAATCCATCTTCTTATCTTCTGCCATTCCTTCAAAATATATCATCTATACCTGCTAATCTCCCTCCTCTCAGAATATCAAACAGTGCACCTGTAACACCACCTCTCTCTTCCCCGACGTCAAGGGGTTCTAAGCGAAAACCAGACTGGGAGTCCATTCCAAATAGCTATGTAACCTCTTTCCGCCATCCATTCTTTGCTGTATCTGCTCCTTCAAGTCCAACAAGATGCCACCATCTTACACCGGCTACAATCCCAGAATGTGACGAGTCGGACGCTTCAACTGTGGACTCTGGTCGCTGGGTCAGCTTCCAGACTGTGGCACCTTCCGTGGCTCCTCCTTCCCCTACGTTTAATCTGATGAAACCAGTTAGTCAGCAAAACTCTCTCCATGATGCAGTTGACAGACATGGAGCAATGGGCTGGGGTGCTACCTCTGATAGGGGACGAGGCTCCGAGTTTGAATTTGAGAAATTTGAGAGTGGCGCGGTGAAGGCGTGGGAGGGTGAGAGAATTCATGAAGTTGGGGTGGACGACTTGGAGCTTACTCTTGGGGGTGGGAAGGCCCGTTGTTAA 960 50.62 MTGRGSSGRTPTWKERENNKRRERRRRAIAAKIYTGLRAQGNYKLPKHCDNNEVLKALCNEAGWVVEEDGTTYRKGSKPPPIDIGTTANMSACSSLQPSPQSSCFPSPVPSYHASPSSSSFPSPTRFDGNPSSYLLPFLQNISSIPANLPPLRISNSAPVTPPLSSPTSRGSKRKPDWESIPNSYVTSFRHPFFAVSAPSSPTRCHHLTPATIPECDESDASTVDSGRWVSFQTVAPSVAPPSPTFNLMKPVSQQNSLHDAVDRHGAMGWGATSDRGRGSEFEFEKFESGAVKAWEGERIHEVGVDDLELTLGGGKARC 319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3457736 3460519 + Cp4.1LG10g01080.1 Cpe10g00589 476126

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe10g00589 319 MobiDBLite consensus disorder prediction 1 24 - -
Cpe10g00589 319 PANTHER BES1/BZR1 HOMOLOG PROTEIN 3-RELATED 1 318 IPR033264 GO:0003700|GO:0006351|GO:0009742
Cpe10g00589 319 MobiDBLite consensus disorder prediction 155 179 - -
Cpe10g00589 319 PANTHER BES1/BZR1 HOMOLOG PROTEIN 1 1 318 - -
Cpe10g00589 319 MobiDBLite consensus disorder prediction 155 171 - -
Cpe10g00589 319 MobiDBLite consensus disorder prediction 10 24 - -
Cpe10g00589 319 MobiDBLite consensus disorder prediction 87 109 - -
Cpe10g00589 319 MobiDBLite consensus disorder prediction 71 109 - -
Cpe10g00589 319 Pfam BES1/BZR1 plant transcription factor, N-terminal 6 129 IPR008540 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe10g00589 K14503 BZR1_2; brassinosteroid resistant 1/2 - csv:101216171 563.533
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe10g00589 Cpe-Chr10:3457736 Cpe11g00187 Cpe-Chr11:1017927 1.44E-90 dispersed
Cpe10g00589 Cpe-Chr10:3457736 Cpe19g00793 Cpe-Chr19:5997709 0 wgd
Cpe10g00589 Cpe-Chr10:3457736 Cpe07g00438 Cpe-Chr7:2812803 7.39E-89 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe07g00438 CCT 1 306 BZR Transcription Factor Family AT1G75080 59.5 4.7e-82 302.0
Cpe11g00187 CCT 49 314 BZR Transcription Factor Family AT1G75080 61.2 2.9e-79 292.7
Cpe10g00589 . 28 318 BZR Transcription Factor Family AT1G75080 58.1 3.2e-78 289.3
Cpe19g00793 . 33 323 BZR Transcription Factor Family AT1G75080 58.3 3.2e-78 289.3
Cpe07g00438 CCT 1 306 BZR Transcription Factor Family AT1G19350 57.6 7.6e-80 294.7
Cpe11g00187 CCT 49 315 BZR Transcription Factor Family AT1G19350 61.0 2.9e-79 292.7
Cpe10g00589 . 28 317 BZR Transcription Factor Family AT1G19350 58.9 9.2e-78 287.7
Cpe19g00793 . 33 321 BZR Transcription Factor Family AT1G19350 59.3 1.2e-77 287.3
Cpe10g00589 . 6 313 BZR Transcription Factor Family AT3G50750 58.0 8.4e-77 284.3
Cpe19g00793 . 10 323 BZR Transcription Factor Family AT3G50750 56.3 5.5e-76 281.6
Cpe11g00187 CCT 17 309 BZR Transcription Factor Family AT3G50750 50.2 3.3e-57 219.2
Cpe01g00599 CST 77 326 BZR Transcription Factor Family AT4G18890 54.2 1.5e-49 193.4
Cpe09g00790 CCT 80 326 BZR Transcription Factor Family AT4G18890 51.2 1.2e-48 190.3
Cpe14g00363 . 77 323 BZR Transcription Factor Family AT4G18890 50.6 1.9e-44 176.4
Cpe01g00599 CST 1 326 BZR Transcription Factor Family AT1G78700 72.2 1.5e-117 419.9
Cpe14g00363 . 1 323 BZR Transcription Factor Family AT1G78700 69.9 5.8e-109 391.3
Cpe20g00481 CCT 1 342 BZR Transcription Factor Family AT1G78700 65.8 4.3e-104 375.2
Cpe09g00790 CCT 1 326 BZR Transcription Factor Family AT1G78700 69.2 2.8e-103 372.5
Cpe10g00589 . 28 200 BZR Transcription Factor Family AT4G36780 78.5 1.0e-63 240.7
Cpe19g00793 . 33 204 BZR Transcription Factor Family AT4G36780 75.7 2.4e-60 229.6
Cpe11g00187 CCT 49 213 BZR Transcription Factor Family AT4G36780 57.6 2.5e-38 156.4
Cpe07g00438 CCT 33 204 BZR Transcription Factor Family AT4G36780 56.7 1.6e-37 153.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009316 0 1 1 1 2 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50126 PF05687 BES1_N 2.00E-63 No_clan Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe10g00589 Cpe_Chr10 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 1.067263 0.64232 1.120719