Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe10g00592 CATAATCCTCCGCTTGACGCCTTGGTTGTTCCGTCAGAGGACTATCACCAGAGTGAATATGTATCTGCGAGAGATAAGCGACGTGAATTTGTTTCAGGTTTCACCGGAAGTGCTGGTCTGGCACTTATAACCCAGAAACAAGCATTACTGTGGACCGATGGCCGGTATTTTCTGCAGGCAATTCAGCAGCTTAGTGATCAGTGGAAACTTATGCGAATTGGAGAGGATCCTTCTGAAGATCTCTGGATGGCAGATAATCTGCCAGCGGATGCAGCCGTTGGAGTGGATCCTTGGTGTGTGTCAGTGGACACTGCACAAAAGTGGATCCACGCATTTTCCAAGAAGCAGCAGAAGCTGGTTCAAACTTCCACAAACTTAGTTGATGAAGTTTGGAAGAATCGACCACCACCAGAAATAAATCCTGTTATCATACACCCACTTGAATATGCTGGCCGCTCTGTTGAAGATAAGTTGAAGACTTTGAGAGCAAAGCTCTCGCAAGAGAAAGCTCATGGTTTAATTGTGGTTGGACTTGATGAAGTAGCTTGGTTGTACAACATCCGTGGGAGTGATGTGTCATACTGTCCAGTTGTACATGCATTTGCAATAGTGACACTCATTTCAGCATTCTTTTACGTGGAGAAGAGGAAGGTTTCTGATGAGGTGCGCTTGTACATGGAAAAAAATGGAATTGAAGTTCGGGACTATAGTGCAGTAATAACAGATGTGTCCTCACTTGCATCTAATCAACTTAACATGTCATCTAGTTCAATCGACATTGCAGGATCTAATGGAACTAAAGTAGAAAGCCAGAGTTCTGGCCTCATATGGGCTGATCCTGCACAATGCTGCTATGCTTTGTATTCTAAACTGAACTCTGATAAAGTTCTCCTGCAACAGTCGCCATTGGCTCTTGCAAAAGCTCTCAAGAACTCTGTTGAGTTGGACGGACTAAAGAATGCACACATTCGGGATGGTGCAGCTGTTGTACAATATCTTGTGTGGCTGGACAAGCAGCTGCAAGAGACTTATGGGGCTTCTGGTTACTTTCTGGAAGGGCATGGAGTGAGGAAGCCCAAACCGTCGGACTCGGAGAAACTGACAGAAGTTAGTGTAAGTGATAAGCTTGAAGCTTTCCGAGCATCAAAGAAGCATTTTAGAGGCCTAAGTTTCCCTACTATTTCCTCTGTTGGTCCAAATGCTGCAATTATACATTATGGACCACAAGCAGAGACGTGTGCCGAGTTGGATCCTGAAAGCATGTATCTTTTTGACTCAGGAGCTCAGTATTTGGATGGAACAACCGATATCACACGGACAGTCCATTTTGGATTACCTTCAGCTCATGAAAAAGCTTGTTATACTGCAGTTCTCAAAGGCCATATTGCTTTGGGAAATGCAAGATTTCCAAATGGCACAAATGGCCAGCAATTGGATATTCTTGCTCGAGTTCCTTTGTGGAAGGATGGTCTGGATTATCTACATGGCACTGGCCATGGAATTGGTTCTTTCCTTAATGTTCATGAAGGGCCTCATTTAATTAGTTTCAGACCTCGTGCTCGAAATGTTCCACTTCAAGCTTCAATGACTGTTACGGATGAGCCTGGCTATTACGAGGATGGTGCCTTCGGTATTAGATTGGAGAATGTACTTATAGTAAAGGACGCTGACACAAAATTTAATTTTGGTGATAAAGGCTACTTATCATTCGAGCACATAACATGGGCACCGTACCAGAGAAAGTTGATCAACACAAGTCTTCTCACAAGTGAGGAATTGGATTGGTTGAACAGTTACCATTCAAAATGTAGGGATATTCTTGCTCCATATTTGGATGAATCCGAGAAGGCATGGCTGAATAAAGCCACTGAGCCAATACCTGCCTGA 1887 43.83 HNPPLDALVVPSEDYHQSEYVSARDKRREFVSGFTGSAGLALITQKQALLWTDGRYFLQAIQQLSDQWKLMRIGEDPSEDLWMADNLPADAAVGVDPWCVSVDTAQKWIHAFSKKQQKLVQTSTNLVDEVWKNRPPPEINPVIIHPLEYAGRSVEDKLKTLRAKLSQEKAHGLIVVGLDEVAWLYNIRGSDVSYCPVVHAFAIVTLISAFFYVEKRKVSDEVRLYMEKNGIEVRDYSAVITDVSSLASNQLNMSSSSIDIAGSNGTKVESQSSGLIWADPAQCCYALYSKLNSDKVLLQQSPLALAKALKNSVELDGLKNAHIRDGAAVVQYLVWLDKQLQETYGASGYFLEGHGVRKPKPSDSEKLTEVSVSDKLEAFRASKKHFRGLSFPTISSVGPNAAIIHYGPQAETCAELDPESMYLFDSGAQYLDGTTDITRTVHFGLPSAHEKACYTAVLKGHIALGNARFPNGTNGQQLDILARVPLWKDGLDYLHGTGHGIGSFLNVHEGPHLISFRPRARNVPLQASMTVTDEPGYYEDGAFGIRLENVLIVKDADTKFNFGDKGYLSFEHITWAPYQRKLINTSLLTSEELDWLNSYHSKCRDILAPYLDESEKAWLNKATEPIPA 628
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3469372 3477541 - Cp4.1LG10g01030.1 Cpe10g00592 476129

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe10g00592 628 PANTHER AMINOPEPTIDASE P1 1 626 - -
Cpe10g00592 628 Pfam Creatinase/Prolidase N-terminal domain 133 314 - -
Cpe10g00592 628 SUPERFAMILY Creatinase/aminopeptidase 312 592 IPR036005 -
Cpe10g00592 628 Pfam C-terminal region of peptidase_M24 567 626 IPR032416 -
Cpe10g00592 628 Gene3D - 132 306 IPR029149 -
Cpe10g00592 628 PANTHER XAA-PRO AMINOPEPTIDASE 1 1 626 - -
Cpe10g00592 628 Gene3D Creatinase/methionine aminopeptidase superfamily 308 627 IPR036005 -
Cpe10g00592 628 ProSitePatterns Aminopeptidase P and proline dipeptidase signature. 495 507 IPR001131 -
Cpe10g00592 628 Gene3D - 1 131 IPR029149 -
Cpe10g00592 628 SUPERFAMILY Creatinase/prolidase N-terminal domain 27 117 IPR029149 -
Cpe10g00592 628 Pfam Metallopeptidase family M24 366 554 IPR000994 -
Cpe10g00592 628 CDD APP 317 563 IPR033740 GO:0070006
Cpe10g00592 628 Pfam Creatinase/Prolidase N-terminal domain 5 128 IPR000587 GO:0016787
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe10g00592 K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9] - csv:101216415 1164.83
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe10g00592 Cpe19g00796 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00904 Cpe-Chr7:8099838 Cpe10g00592 Cpe-Chr10:3469372 1.33E-54 dispersed
Cpe10g00592 Cpe-Chr10:3469372 Cpe19g00796 Cpe-Chr19:6008596 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g924 . Blo16g00036 . . . Bpe13g00455 . . . . Cma03g00772 Cma07g00505 Car03g00702 Car07g00442 Sed14g1097 Cpe19g00796 Cpe10g00592 Bhi03g01267 Tan03g1954 Cmetu05g1256 . Hepe04g1486 . . Cla01g01884 Cam01g1975 Cec04g1627 Cco04g1691 Clacu01g1996 Cmu01g1866 Cre04g1547 . . . Cone9ag1530 Lsi01g00701 . . Cme08g00824 . . Bda11g01877 . . . . . . Cmo03g00802 Cmo07g00503 . . . . . . . . . . . . . . . . . . . . . Csa06g03215 Chy02g00671 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007552 1 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 3 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe10g00592 Cpe_Chr10 FPKM 20.124668 21.534674 18.840893 16.925344 10.396346 12.12497 10.982487 31.248844 30.568081 31.330534