Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe10g00598 ATGCCGGCCGATGAAAAGGATTCGTCCATGGCTTCCGGGAAGGCTAGTGTTTCTTCTCCGGGAGCGAAATCTGCCACTAAGAAAAAGCGAAATCTACCCGGAATGCCAGATCCGGAAGCGGAAGTAATTGCTCTGTCTCCGAAGACCCTTTTTGCCACAAATCGTTTTGTTTGCGAGATTTGTAACAAGGGGTTTCAGAGGGATCAGAATCTGCAGCTTCACCGGCGAGGTCATAATCTTCCATGGAAGCTCCGGCAGAGGACAAGTAAGGAGGTGAAGAAGAAGGTCTATGTTTGCCCTGAGAGTTCTTGTGTTCATCATGATCCCTCCAGAGCTCTGGGTGATCTGACTGGGATTAAGAAGCACTTTTGCAGAAAGCACGGTGAGAAGAAGTGGAAATGCGATAAGTGTTCGAAGAAATACGCTGTTCAGTCTGATTGGAAAGCTCATTCCAAAATTTGTGGAACCAGAGAGTATAAATGCGATTGTGGAACTTTGTTTTCCTGGAGGGATAGCTTCATTAGACATAGAGCTTTCTGTGATGCATTGGCGAAGGAAAGTTCAAAAGCTCAGCCTATGCCGGTGGACAAACCGGATTTGCACTCCGACCCCGATGGCGATTCTCAGTCAGCGGCGGTCAAACCAAGTCTAGAGCCTTCTCCTCCACCTCCACCTCCACCGCCTCCGCCATCATCACCGCCGGTTTCATCTCCTCCACAGTCAACTGGTGAGCTAATAACTGCATTACCTGTGCCTAGTCAAGAGCCGTCGGAGAATCCCTCGCAATGTACTGAAGAAGCACCCGGTACACCTGGCCTGAGTCGGAGCAGCAGCAGCAGCAACAAGAGCGCGAGCAGCAATAGCAGCTCGAGAAGCAGTGGATTTGCTGGCTTATTTGCTTCGTCGATGACATCAAGGAGCCTTCAACCTCCAAGACCTCCTGGTTTTACAGACCTAATGCAAGCCATGGCTTGTTCAGATCGCTCATCAGACTATGCATCATCTTCAACCATTGAACCTACTTCTCTGTGTCTTGCAATGAATCAAGGGCCATCGATCTTCCGAACGGCCAGCCAAGACCTCCGGCAGTATGCACCGACGCCACAGCCTGCAATGTCCGCCACAGCATTACTCCAAAAAGCGGCTCAAATAGGTGCAACGGCATCAAATGCCTCGTTGCTTCGTGGTTTGGGTTTAGTATCATCTTCTTCCTCTTTAGCTGCCCAGCAAGAGAACTTGCCATGGAACCACCAGAGCCATGGTCAACCTGATGGCATCTCGATCGCTGCAGGGCTCGGACTCGGACTTCCCTGTGATGGAAACTCAGGATTGAAGGAACTAATGATGGGAAACCATGCCATGTTTCCCCCAAAACATACCACCCTGGATTTCCTTGGATTGGGAATGGCAGCTGATGGAAGCCCCAACAGTGGCCTCGCTGCGCTAATTACATCAGTCGGCAGCGGTGTAGACGTCGGGGTAACAACGTTATCATACGACGGCAGCGGTGTAGACGTCGGGGTAACAACGTTATCATACAGCGGCAGCGGTGACATATCGGAGAAGAAAACCGAAACAGAATAA 1584 50.57 MPADEKDSSMASGKASVSSPGAKSATKKKRNLPGMPDPEAEVIALSPKTLFATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSKEVKKKVYVCPESSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTLFSWRDSFIRHRAFCDALAKESSKAQPMPVDKPDLHSDPDGDSQSAAVKPSLEPSPPPPPPPPPPSSPPVSSPPQSTGELITALPVPSQEPSENPSQCTEEAPGTPGLSRSSSSSNKSASSNSSSRSSGFAGLFASSMTSRSLQPPRPPGFTDLMQAMACSDRSSDYASSSTIEPTSLCLAMNQGPSIFRTASQDLRQYAPTPQPAMSATALLQKAAQIGATASNASLLRGLGLVSSSSSLAAQQENLPWNHQSHGQPDGISIAAGLGLGLPCDGNSGLKELMMGNHAMFPPKHTTLDFLGLGMAADGSPNSGLAALITSVGSGVDVGVTTLSYDGSGVDVGVTTLSYSGSGDISEKKTETE 527
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3500010 3503096 - Cp4.1LG10g00810.1 Cpe10g00598 476135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe10g00598 527 Gene3D Classic Zinc Finger 110 190 - -
Cpe10g00598 527 SUPERFAMILY beta-beta-alpha zinc fingers 55 152 IPR036236 -
Cpe10g00598 527 MobiDBLite consensus disorder prediction 186 293 - -
Cpe10g00598 527 Gene3D Classic Zinc Finger 36 106 - -
Cpe10g00598 527 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 4 507 - -
Cpe10g00598 527 MobiDBLite consensus disorder prediction 238 293 - -
Cpe10g00598 527 MobiDBLite consensus disorder prediction 11 25 - -
Cpe10g00598 527 MobiDBLite consensus disorder prediction 216 237 - -
Cpe10g00598 527 ProSitePatterns Zinc finger C2H2 type domain signature. 58 78 IPR013087 -
Cpe10g00598 527 SMART c2h2final6 97 127 IPR013087 -
Cpe10g00598 527 SMART c2h2final6 132 152 IPR013087 -
Cpe10g00598 527 SMART c2h2final6 56 78 IPR013087 -
Cpe10g00598 527 MobiDBLite consensus disorder prediction 1 39 - -
Cpe10g00598 527 ProSiteProfiles Zinc finger C2H2 type domain profile. 56 78 IPR013087 -
Cpe10g00598 527 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 4 507 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe10g00598 Cpe-Chr10:3500010 Cpe14g00555 Cpe-Chr14:3522231 1.34E-133 dispersed
Cpe12g00956 Cpe-Chr12:8097758 Cpe10g00598 Cpe-Chr10:3500010 1.01E-52 dispersed
Cpe10g00598 Cpe-Chr10:3500010 Cpe10g00600 Cpe-Chr10:3504977 0 proximal
Cpe10g00598 Cpe-Chr10:3500010 Cpe19g00801 Cpe-Chr19:6035762 2.13E-138 wgd
Cpe10g00598 Cpe-Chr10:3500010 Cpe02g00139 Cpe-Chr2:691915 1.11E-127 wgd
Cpe10g00598 Cpe-Chr10:3500010 Cpe07g00434 Cpe-Chr7:2791390 6.19E-127 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50129 None None None None Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe10g00598 K25869 - csv:101217597 628.246