Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe10g00598 | ATGCCGGCCGATGAAAAGGATTCGTCCATGGCTTCCGGGAAGGCTAGTGTTTCTTCTCCGGGAGCGAAATCTGCCACTAAGAAAAAGCGAAATCTACCCGGAATGCCAGATCCGGAAGCGGAAGTAATTGCTCTGTCTCCGAAGACCCTTTTTGCCACAAATCGTTTTGTTTGCGAGATTTGTAACAAGGGGTTTCAGAGGGATCAGAATCTGCAGCTTCACCGGCGAGGTCATAATCTTCCATGGAAGCTCCGGCAGAGGACAAGTAAGGAGGTGAAGAAGAAGGTCTATGTTTGCCCTGAGAGTTCTTGTGTTCATCATGATCCCTCCAGAGCTCTGGGTGATCTGACTGGGATTAAGAAGCACTTTTGCAGAAAGCACGGTGAGAAGAAGTGGAAATGCGATAAGTGTTCGAAGAAATACGCTGTTCAGTCTGATTGGAAAGCTCATTCCAAAATTTGTGGAACCAGAGAGTATAAATGCGATTGTGGAACTTTGTTTTCCTGGAGGGATAGCTTCATTAGACATAGAGCTTTCTGTGATGCATTGGCGAAGGAAAGTTCAAAAGCTCAGCCTATGCCGGTGGACAAACCGGATTTGCACTCCGACCCCGATGGCGATTCTCAGTCAGCGGCGGTCAAACCAAGTCTAGAGCCTTCTCCTCCACCTCCACCTCCACCGCCTCCGCCATCATCACCGCCGGTTTCATCTCCTCCACAGTCAACTGGTGAGCTAATAACTGCATTACCTGTGCCTAGTCAAGAGCCGTCGGAGAATCCCTCGCAATGTACTGAAGAAGCACCCGGTACACCTGGCCTGAGTCGGAGCAGCAGCAGCAGCAACAAGAGCGCGAGCAGCAATAGCAGCTCGAGAAGCAGTGGATTTGCTGGCTTATTTGCTTCGTCGATGACATCAAGGAGCCTTCAACCTCCAAGACCTCCTGGTTTTACAGACCTAATGCAAGCCATGGCTTGTTCAGATCGCTCATCAGACTATGCATCATCTTCAACCATTGAACCTACTTCTCTGTGTCTTGCAATGAATCAAGGGCCATCGATCTTCCGAACGGCCAGCCAAGACCTCCGGCAGTATGCACCGACGCCACAGCCTGCAATGTCCGCCACAGCATTACTCCAAAAAGCGGCTCAAATAGGTGCAACGGCATCAAATGCCTCGTTGCTTCGTGGTTTGGGTTTAGTATCATCTTCTTCCTCTTTAGCTGCCCAGCAAGAGAACTTGCCATGGAACCACCAGAGCCATGGTCAACCTGATGGCATCTCGATCGCTGCAGGGCTCGGACTCGGACTTCCCTGTGATGGAAACTCAGGATTGAAGGAACTAATGATGGGAAACCATGCCATGTTTCCCCCAAAACATACCACCCTGGATTTCCTTGGATTGGGAATGGCAGCTGATGGAAGCCCCAACAGTGGCCTCGCTGCGCTAATTACATCAGTCGGCAGCGGTGTAGACGTCGGGGTAACAACGTTATCATACGACGGCAGCGGTGTAGACGTCGGGGTAACAACGTTATCATACAGCGGCAGCGGTGACATATCGGAGAAGAAAACCGAAACAGAATAA | 1584 | 50.57 | MPADEKDSSMASGKASVSSPGAKSATKKKRNLPGMPDPEAEVIALSPKTLFATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSKEVKKKVYVCPESSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTLFSWRDSFIRHRAFCDALAKESSKAQPMPVDKPDLHSDPDGDSQSAAVKPSLEPSPPPPPPPPPPSSPPVSSPPQSTGELITALPVPSQEPSENPSQCTEEAPGTPGLSRSSSSSNKSASSNSSSRSSGFAGLFASSMTSRSLQPPRPPGFTDLMQAMACSDRSSDYASSSTIEPTSLCLAMNQGPSIFRTASQDLRQYAPTPQPAMSATALLQKAAQIGATASNASLLRGLGLVSSSSSLAAQQENLPWNHQSHGQPDGISIAAGLGLGLPCDGNSGLKELMMGNHAMFPPKHTTLDFLGLGMAADGSPNSGLAALITSVGSGVDVGVTTLSYDGSGVDVGVTTLSYSGSGDISEKKTETE | 527 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 3500010 | 3503096 | - | Cp4.1LG10g00810.1 | Cpe10g00598 | 476135 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe10g00598 | 527 | Gene3D | Classic Zinc Finger | 110 | 190 | - | - | |
Cpe10g00598 | 527 | SUPERFAMILY | beta-beta-alpha zinc fingers | 55 | 152 | IPR036236 | - | |
Cpe10g00598 | 527 | MobiDBLite | consensus disorder prediction | 186 | 293 | - | - | |
Cpe10g00598 | 527 | Gene3D | Classic Zinc Finger | 36 | 106 | - | - | |
Cpe10g00598 | 527 | PANTHER | PROTEIN INDETERMINATE-DOMAIN 2-LIKE | 4 | 507 | - | - | |
Cpe10g00598 | 527 | MobiDBLite | consensus disorder prediction | 238 | 293 | - | - | |
Cpe10g00598 | 527 | MobiDBLite | consensus disorder prediction | 11 | 25 | - | - | |
Cpe10g00598 | 527 | MobiDBLite | consensus disorder prediction | 216 | 237 | - | - | |
Cpe10g00598 | 527 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 58 | 78 | IPR013087 | - | |
Cpe10g00598 | 527 | SMART | c2h2final6 | 97 | 127 | IPR013087 | - | |
Cpe10g00598 | 527 | SMART | c2h2final6 | 132 | 152 | IPR013087 | - | |
Cpe10g00598 | 527 | SMART | c2h2final6 | 56 | 78 | IPR013087 | - | |
Cpe10g00598 | 527 | MobiDBLite | consensus disorder prediction | 1 | 39 | - | - | |
Cpe10g00598 | 527 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 56 | 78 | IPR013087 | - | |
Cpe10g00598 | 527 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 4 | 507 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe10g00598 | Cpe-Chr10:3500010 | Cpe14g00555 | Cpe-Chr14:3522231 | 1.34E-133 | dispersed | |
Cpe12g00956 | Cpe-Chr12:8097758 | Cpe10g00598 | Cpe-Chr10:3500010 | 1.01E-52 | dispersed | |
Cpe10g00598 | Cpe-Chr10:3500010 | Cpe10g00600 | Cpe-Chr10:3504977 | 0 | proximal | |
Cpe10g00598 | Cpe-Chr10:3500010 | Cpe19g00801 | Cpe-Chr19:6035762 | 2.13E-138 | wgd | |
Cpe10g00598 | Cpe-Chr10:3500010 | Cpe02g00139 | Cpe-Chr2:691915 | 1.11E-127 | wgd | |
Cpe10g00598 | Cpe-Chr10:3500010 | Cpe07g00434 | Cpe-Chr7:2791390 | 6.19E-127 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
50129 | None | None | None | None | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe10g00598 | K25869 | - | csv:101217597 | 628.246 |