Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe10g00599 ATGAAGAAATCCACTGTAATTTCAGGATCGCCATTTTCACTTTCTTTTCTGTTCACTGTCTTCTTCCTTTTCGTTTCTCTACCTTCGAATGCAGATGATAAATGGTGGGAAGCGGCCTGTCCTGTGGTGAAGAGAGCCAATGAGAGAAAATCACTTCTCAAAACAGAGTACGGCGAGATCTCCGCCGTTGATTTATACGATGCCTCTCAATTCGGACCTTACCATCTTCAGTTCATTACAATGGAACCCAACTCCCTGTTTCTTCCTGTTCTTCTTCATGCTGACATGGTGTTGTACATGCACACTGGAAGTGGGAGATTGAATTGGTTTGATGATGATGATTTGAGGGAGGTGGATTTACGGCGGGGAGATATTTTCAGGCTTCAACCAGGCGCCATTTTTTACATTCATAGCAGCTTAGAGACTGAACGTGAAAAGCTTCGGATGTATGCTCTGTTTTCCAGCACAGATGAGGACCCATTTGAGCCGGCCATCGGAGCGTACTCCCGTGTCACCGATCTAGTTCGTGGATTCGACAAAGAAGTCCTCTGTAAAGCTTTCATGGTCCCGGAGGAAGTAATAGAGGAAATAATGGACGCGAAGAGGCCGCCGCTGATTGTCCACGCTGCGACCACTTTGAGCAAGAAGCCGAGGTCGTCATTGTTGATGTCGTTGGAATTAGAAGCTCGGTTCTTGAAATCTTTCATAGGGGGAGGCGGGAGTGGTATGGATTTCAATAAGAAGAAGAAGAAGAAGAAGAAAGGGTTGTACAACGTTTTTGAAGCAGACCCAGATTTTGAAAACTGTAATGGATGGAGTTTGACTGTAACTAAGAAAGTCTCCCATCAGTTGAAGGGCTCCAACATTGGCTTCTTCGTAGTCAACCTCACAGCGGGCTCAATGATGGGTCCGCATTGGAATCCAAGGGCGTGGGAGATTGGGATTGTGACGTCGGAGGAGGCAGGGGTGGTTCGGGTGGGGTGTTCGAGCATGACGAACAGTTCAATATGCAAGAAATGGAGTTTTGTAGTAGGTAAAGGTGATGTGTTCGTGGTGCCAAGGTTCCATCCAATGGCGCAGATGTCGTTCAACAATGGGTCGTTTGTTTTTGTGGGATTTAGCACGACGAACAGGAATAACCTGCCACAGTTCTTGGCTGGACGTAGCTCGGTGTTGCAAACTGTGGACAGGGAAGTGTTGGCGTGGTCGTTTGATGTGAATGTGACAACGATTGATCGGTTGTTGGGAGCTAGAGTTGAGTCAGTCATATTGGAGTGTACTTCTTGTGCTGAAGAGGAAGTGAGGAAAATGGAGGAGGAAGCTGAGAGAGAGAGACAAGAGGAGGAGGAGAGGAAGCGGAAAGAGGAGGAGGAGAGGAAGCGGAAAGAGGAGGAGGAGAGGAAGCGAGAGGAGGAGGAGGAGAGGAAGCGAGAGGAGGAGGAGGAGAGGAAGCGAGAAGAGGAGGAAGCAAAGAGAGAGGAGGAGAGGAAGCGAGAAGAGGAGGAAGCAAAGAGAGAGGAAGAGAGGAGGAGAAGGGAAGAGGAAGAACGGGAGAGGGAAGAAGAGGAAGCAAGAAAAAGGGAAGAGGAAGAACGGGAGAGGGAAGAAGAGGAAGCAAGAAAACGTGAGGATGAAGAACGGGAGAGGGAAGAAGAGGAAGCAAGAAAACGGGAGGAGGAAGAACGGGAGAGGGAAGAAAGGGAGAGAAGGGAAGAGGAAGAGGCGGAGAGGGGAGAAAGGGAGGCAGAGAGAGAGGCAGAGGAAGCTAGGGAGAGTGAGGAAACACGTCGAAGAGAGAGAGGGAGGAGACGCAGAGAGGAGGAGGCAAGAAAAAGGGAAGAGGAAGAAAGGGAGAGGGAGAGAAGGGAAGAGGAAGAGGCGGAGAGGGGAGAAAGGGAGGCAGAGAGAGAGGCAGAGGAAGCTAGGGAGAGTGAGGAAACACGTCGAAGAGAGAGAGGGAGGAGACGCAGAGAGGAGGAGGCAAGAAAAAGGGAAGAGGAAGAAAGGGAGAGGGAGAGAAGGGAAGAGGAAGAGGCGGAGAGGGGAGAAAGGGAGGCAGAGAGAGAGGCAGAGGAAGCTAGGGAGAGTGAGGAAGCACATCGAAGAGAGAGAGGGAGGAGACGCAGAGAGGCGGAGAGAGAGGCAGAAGAAAGACAGAGAAGACGCAGGGAAGAAGAAGAAGAGCCAGCACTAAGAATTCTGAGACAACAAACGTAA 2217 50.16 MKKSTVISGSPFSLSFLFTVFFLFVSLPSNADDKWWEAACPVVKRANERKSLLKTEYGEISAVDLYDASQFGPYHLQFITMEPNSLFLPVLLHADMVLYMHTGSGRLNWFDDDDLREVDLRRGDIFRLQPGAIFYIHSSLETEREKLRMYALFSSTDEDPFEPAIGAYSRVTDLVRGFDKEVLCKAFMVPEEVIEEIMDAKRPPLIVHAATTLSKKPRSSLLMSLELEARFLKSFIGGGGSGMDFNKKKKKKKKGLYNVFEADPDFENCNGWSLTVTKKVSHQLKGSNIGFFVVNLTAGSMMGPHWNPRAWEIGIVTSEEAGVVRVGCSSMTNSSICKKWSFVVGKGDVFVVPRFHPMAQMSFNNGSFVFVGFSTTNRNNLPQFLAGRSSVLQTVDREVLAWSFDVNVTTIDRLLGARVESVILECTSCAEEEVRKMEEEAERERQEEEERKRKEEEERKRKEEEERKREEEEERKREEEEERKREEEEAKREEERKREEEEAKREEERRRREEEEREREEEEARKREEEEREREEEEARKREDEEREREEEEARKREEEEREREERERREEEEAERGEREAEREAEEARESEETRRRERGRRRREEEARKREEEERERERREEEEAERGEREAEREAEEARESEETRRRERGRRRREEEARKREEEERERERREEEEAERGEREAEREAEEARESEEAHRRERGRRRREAEREAEERQRRRREEEEEPALRILRQQT 738
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3503812 3506385 + Cp4.1LG10g00880.1 Cpe10g00599 476136

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe10g00599 738 Coils Coil 427 703 - -
Cpe10g00599 738 Gene3D Jelly Rolls 37 218 IPR014710 -
Cpe10g00599 738 CDD cupin_7S_vicilin-like_N 52 209 - -
Cpe10g00599 738 PANTHER OS03G0336100 PROTEIN-RELATED 16 474 - -
Cpe10g00599 738 SMART Cupin_1_3 257 412 IPR006045 -
Cpe10g00599 738 SMART Cupin_1_3 44 195 IPR006045 -
Cpe10g00599 738 MobiDBLite consensus disorder prediction 478 738 - -
Cpe10g00599 738 SUPERFAMILY RmlC-like cupins 12 418 IPR011051 -
Cpe10g00599 738 PANTHER PREPROMP73 16 474 - -
Cpe10g00599 738 Gene3D Jelly Rolls 245 429 IPR014710 -
Cpe10g00599 738 Coils Coil 706 728 - -
Cpe10g00599 738 MobiDBLite consensus disorder prediction 434 456 - -
Cpe10g00599 738 MobiDBLite consensus disorder prediction 478 732 - -
Cpe10g00599 738 CDD cupin_7S_vicilin-like_C 264 421 - -
Cpe10g00599 738 Pfam Cupin 52 192 IPR006045 -
Cpe10g00599 738 Pfam Cupin 257 410 IPR006045 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe10g00599 - - - cpep:111804454 837.795
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe10g00599 Cpe-Chr10:3503812 Cpe16g00550 Cpe-Chr16:6329950 7.51E-48 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g934 . . Bda04g00062 . . . Bma09g00063 . . . Cma03g00763 . . . Sed14g1100 . Cpe10g00599 Bhi03g01275 Tan03g1963 Cmetu08g1687 . Hepe04g1494 . . . . . . . . . . . . Cone9ag1535 Lsi01g00692 . . Cme08g00830 Blo05g00786 . . . . Bpe06g00052 . . . Cmo03g00792 . . . . . . . . . . . . . . . . . . . . . . Csa06g03224 Chy02g00664 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012868 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe10g00599 Cpe_Chr10 FPKM 1.269646 1.546721 2.027665 1.407138 3.794079 3.633136 3.436673 1.218945 1.3564 1.639268