Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe10g00600 | ATGCCGGCCGATTTAGAGAATTCCTCGTCGGCTTCCGGCGAACCCACTGAATCCTCCCCCGGAAACGTCGCTGCGACTCCCAAACCCGCCGCTAAGAAAAAACGAAATCTCCCCGGAATGCCAGATCCGGATGCGGAAGTGATTGCTCTGTCCCCGAAGACCCTTTTGGCCACAAATCGATTTGTTTGCGAGATTTGTAACAAGGGGTTTCAGAGGGATCAGAATCTGCAGCTTCACCGGCGAGGGCACAATCTTCCATGGAAGCTCCGGCAGAGGACAAGTAAGGAGGTGAAGAAGAAGGTCTATGTTTGCCCTGAGAGTTCTTGTGTTCATCACGATCCCTCTAGAGCTCTGGGTGATCTGACTGGGATTAAGAAGCACTTTTGCAGAAAGCACGGCGAGAAGAAGTGGAAATGCGACAAGTGTTCGAAGAAATACGCCGTTCAGTCTGATTGGAAAGCCCATTCCAAAATTTGTGGAACTAGAGAGTATAAATGCGATTGTGGTACTCTGTTTTCCAGAAGGGACAGCTTCATTACACATAGAGCTTTCTGTGATGCATTGGCAGAGGAAAATGCGAAAGCTCAGCCTCAGTCGTTGGTGGACAAACCGGTTTCTGATTCTCAGAAAGCGGTGGGGTCTAGTCCGAAGCCATCTCCGCCGCCGGAACCGTCACCTCCGCCGTCAACTTGTGTTCTGTCTCCTGTCTTGCCGATTCAGAGTCAAGAGAATCGACCCGAAGAAGCACCGGTGGCTACGACGGGCATGAGTGGTAGCTGCAGCAGTAGCAGCAGCAAGAGCTCGAGCAGCAACAACAGTTCGAGTAGCCAGTTTGCTAGCTTGTTTGCTTCCACAACTACATCAATGAGCCTGCAACCTCCTCGACCCCCGACATTTACAGACTTGATACATACTATGGCTTGTTCGGATCGCTTGACCGATTATGCACCAACGACGACTATTGAACCTATTTCCCTATGTCTTTCAACTAGCCATGGGGCATCAGTTTTTGGGGCTGCCAGCCAAGAGCTCCGGCAGTACACACCAAGTCCACAACCTGCAATGTCCGCCACTGCATTACTACAAAAGGCTGCTCAAATGGGAGCAGCAGCATCAAATGCTTCATTGCTTCGCGGGTTGGGATTGGGGTTAGTACCGTCCTCCACCACTTCAGCTGCGCCCCAAGAGAGGTTGCCATGGAATCAGCAGAGGCAAATTGAAGCAGATGGCATCTCGATCAGTGCAGGGCTCGGACTGGGACTCCCTTGTGATGGCAATTCTGGATTGAAGGAACTAATGAGGAGCAGCAACCATTCGATATTTGCTCCAAAACATACTACCCTTGATTTCCTCGGACTGGGGATGGCAGCAGCTGGTGGCAGCCCCAACAGCAGCCTGGCGGCGCTGATTGGCGGGAGTATGGGATCATACGGAGGGGGTGACAAATCCAGCAAAGACATGAACACAAACAATTAA | 1476 | 51.49 | MPADLENSSSASGEPTESSPGNVAATPKPAAKKKRNLPGMPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSKEVKKKVYVCPESSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTLFSRRDSFITHRAFCDALAEENAKAQPQSLVDKPVSDSQKAVGSSPKPSPPPEPSPPPSTCVLSPVLPIQSQENRPEEAPVATTGMSGSCSSSSSKSSSSNNSSSSQFASLFASTTTSMSLQPPRPPTFTDLIHTMACSDRLTDYAPTTTIEPISLCLSTSHGASVFGAASQELRQYTPSPQPAMSATALLQKAAQMGAAASNASLLRGLGLGLVPSSTTSAAPQERLPWNQQRQIEADGISISAGLGLGLPCDGNSGLKELMRSSNHSIFAPKHTTLDFLGLGMAAAGGSPNSSLAALIGGSMGSYGGGDKSSKDMNTNN | 491 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 3504977 | 3509277 | - | Cp4.1LG10g00790.1 | Cpe10g00600 | 476137 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe10g00600 | 491 | MobiDBLite | consensus disorder prediction | 199 | 214 | - | - | |
Cpe10g00600 | 491 | Gene3D | Classic Zinc Finger | 41 | 111 | - | - | |
Cpe10g00600 | 491 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 61 | 83 | IPR013087 | - | |
Cpe10g00600 | 491 | MobiDBLite | consensus disorder prediction | 195 | 276 | - | - | |
Cpe10g00600 | 491 | SMART | c2h2final6 | 102 | 132 | IPR013087 | - | |
Cpe10g00600 | 491 | SMART | c2h2final6 | 61 | 83 | IPR013087 | - | |
Cpe10g00600 | 491 | SMART | c2h2final6 | 137 | 157 | IPR013087 | - | |
Cpe10g00600 | 491 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
Cpe10g00600 | 491 | Pfam | Zinc finger, C2H2 type | 61 | 83 | IPR013087 | - | |
Cpe10g00600 | 491 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 63 | 83 | IPR013087 | - | |
Cpe10g00600 | 491 | MobiDBLite | consensus disorder prediction | 1 | 45 | - | - | |
Cpe10g00600 | 491 | PANTHER | ZINC FINGER PROTEIN GAI-ASSOCIATED FACTOR 1 | 1 | 487 | - | - | |
Cpe10g00600 | 491 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 1 | 487 | - | - | |
Cpe10g00600 | 491 | MobiDBLite | consensus disorder prediction | 215 | 233 | - | - | |
Cpe10g00600 | 491 | Gene3D | Classic Zinc Finger | 115 | 195 | - | - | |
Cpe10g00600 | 491 | SUPERFAMILY | beta-beta-alpha zinc fingers | 60 | 157 | IPR036236 | - | |
Cpe10g00600 | 491 | MobiDBLite | consensus disorder prediction | 254 | 276 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cpe10g00600 | Cpe14g00555 | CCT | |
Cpe10g00600 | Cpe14g00555 | ECH | |
Cpe10g00600 | Cpe19g00801 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe02g00139 | Cpe-Chr2:691915 | Cpe10g00600 | Cpe-Chr10:3504977 | 1.78E-131 | dispersed | |
Cpe02g00263 | Cpe-Chr2:1362081 | Cpe10g00600 | Cpe-Chr10:3504977 | 5.49E-112 | dispersed | |
Cpe03g00175 | Cpe-Chr3:867681 | Cpe10g00600 | Cpe-Chr10:3504977 | 5.52E-115 | dispersed | |
Cpe07g00434 | Cpe-Chr7:2791390 | Cpe10g00600 | Cpe-Chr10:3504977 | 1.12E-124 | dispersed | |
Cpe08g01104 | Cpe-Chr8:8347530 | Cpe10g00600 | Cpe-Chr10:3504977 | 9.00E-116 | dispersed | |
Cpe09g00622 | Cpe-Chr9:4502966 | Cpe10g00600 | Cpe-Chr10:3504977 | 1.10E-108 | dispersed | |
Cpe10g00600 | Cpe-Chr10:3504977 | Cpe14g00555 | Cpe-Chr14:3522231 | 2.18E-139 | dispersed | |
Cpe12g00615 | Cpe-Chr12:6100750 | Cpe10g00600 | Cpe-Chr10:3504977 | 5.61E-114 | dispersed | |
Cpe17g00872 | Cpe-Chr17:6760175 | Cpe10g00600 | Cpe-Chr10:3504977 | 1.62E-110 | dispersed | |
Cpe19g00403 | Cpe-Chr19:3582056 | Cpe10g00600 | Cpe-Chr10:3504977 | 2.19E-113 | dispersed | |
Cpe10g00598 | Cpe-Chr10:3500010 | Cpe10g00600 | Cpe-Chr10:3504977 | 0 | proximal |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
50130 | PF00096 | zf-C2H2 | 0.0049 | CL0361 | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe10g00600 | K25869 | - | csv:101217597 | 714.916 |