Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe10g00600 ATGCCGGCCGATTTAGAGAATTCCTCGTCGGCTTCCGGCGAACCCACTGAATCCTCCCCCGGAAACGTCGCTGCGACTCCCAAACCCGCCGCTAAGAAAAAACGAAATCTCCCCGGAATGCCAGATCCGGATGCGGAAGTGATTGCTCTGTCCCCGAAGACCCTTTTGGCCACAAATCGATTTGTTTGCGAGATTTGTAACAAGGGGTTTCAGAGGGATCAGAATCTGCAGCTTCACCGGCGAGGGCACAATCTTCCATGGAAGCTCCGGCAGAGGACAAGTAAGGAGGTGAAGAAGAAGGTCTATGTTTGCCCTGAGAGTTCTTGTGTTCATCACGATCCCTCTAGAGCTCTGGGTGATCTGACTGGGATTAAGAAGCACTTTTGCAGAAAGCACGGCGAGAAGAAGTGGAAATGCGACAAGTGTTCGAAGAAATACGCCGTTCAGTCTGATTGGAAAGCCCATTCCAAAATTTGTGGAACTAGAGAGTATAAATGCGATTGTGGTACTCTGTTTTCCAGAAGGGACAGCTTCATTACACATAGAGCTTTCTGTGATGCATTGGCAGAGGAAAATGCGAAAGCTCAGCCTCAGTCGTTGGTGGACAAACCGGTTTCTGATTCTCAGAAAGCGGTGGGGTCTAGTCCGAAGCCATCTCCGCCGCCGGAACCGTCACCTCCGCCGTCAACTTGTGTTCTGTCTCCTGTCTTGCCGATTCAGAGTCAAGAGAATCGACCCGAAGAAGCACCGGTGGCTACGACGGGCATGAGTGGTAGCTGCAGCAGTAGCAGCAGCAAGAGCTCGAGCAGCAACAACAGTTCGAGTAGCCAGTTTGCTAGCTTGTTTGCTTCCACAACTACATCAATGAGCCTGCAACCTCCTCGACCCCCGACATTTACAGACTTGATACATACTATGGCTTGTTCGGATCGCTTGACCGATTATGCACCAACGACGACTATTGAACCTATTTCCCTATGTCTTTCAACTAGCCATGGGGCATCAGTTTTTGGGGCTGCCAGCCAAGAGCTCCGGCAGTACACACCAAGTCCACAACCTGCAATGTCCGCCACTGCATTACTACAAAAGGCTGCTCAAATGGGAGCAGCAGCATCAAATGCTTCATTGCTTCGCGGGTTGGGATTGGGGTTAGTACCGTCCTCCACCACTTCAGCTGCGCCCCAAGAGAGGTTGCCATGGAATCAGCAGAGGCAAATTGAAGCAGATGGCATCTCGATCAGTGCAGGGCTCGGACTGGGACTCCCTTGTGATGGCAATTCTGGATTGAAGGAACTAATGAGGAGCAGCAACCATTCGATATTTGCTCCAAAACATACTACCCTTGATTTCCTCGGACTGGGGATGGCAGCAGCTGGTGGCAGCCCCAACAGCAGCCTGGCGGCGCTGATTGGCGGGAGTATGGGATCATACGGAGGGGGTGACAAATCCAGCAAAGACATGAACACAAACAATTAA 1476 51.49 MPADLENSSSASGEPTESSPGNVAATPKPAAKKKRNLPGMPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSKEVKKKVYVCPESSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTLFSRRDSFITHRAFCDALAEENAKAQPQSLVDKPVSDSQKAVGSSPKPSPPPEPSPPPSTCVLSPVLPIQSQENRPEEAPVATTGMSGSCSSSSSKSSSSNNSSSSQFASLFASTTTSMSLQPPRPPTFTDLIHTMACSDRLTDYAPTTTIEPISLCLSTSHGASVFGAASQELRQYTPSPQPAMSATALLQKAAQMGAAASNASLLRGLGLGLVPSSTTSAAPQERLPWNQQRQIEADGISISAGLGLGLPCDGNSGLKELMRSSNHSIFAPKHTTLDFLGLGMAAAGGSPNSSLAALIGGSMGSYGGGDKSSKDMNTNN 491
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3504977 3509277 - Cp4.1LG10g00790.1 Cpe10g00600 476137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe10g00600 491 MobiDBLite consensus disorder prediction 199 214 - -
Cpe10g00600 491 Gene3D Classic Zinc Finger 41 111 - -
Cpe10g00600 491 ProSiteProfiles Zinc finger C2H2 type domain profile. 61 83 IPR013087 -
Cpe10g00600 491 MobiDBLite consensus disorder prediction 195 276 - -
Cpe10g00600 491 SMART c2h2final6 102 132 IPR013087 -
Cpe10g00600 491 SMART c2h2final6 61 83 IPR013087 -
Cpe10g00600 491 SMART c2h2final6 137 157 IPR013087 -
Cpe10g00600 491 MobiDBLite consensus disorder prediction 1 23 - -
Cpe10g00600 491 Pfam Zinc finger, C2H2 type 61 83 IPR013087 -
Cpe10g00600 491 ProSitePatterns Zinc finger C2H2 type domain signature. 63 83 IPR013087 -
Cpe10g00600 491 MobiDBLite consensus disorder prediction 1 45 - -
Cpe10g00600 491 PANTHER ZINC FINGER PROTEIN GAI-ASSOCIATED FACTOR 1 1 487 - -
Cpe10g00600 491 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 487 - -
Cpe10g00600 491 MobiDBLite consensus disorder prediction 215 233 - -
Cpe10g00600 491 Gene3D Classic Zinc Finger 115 195 - -
Cpe10g00600 491 SUPERFAMILY beta-beta-alpha zinc fingers 60 157 IPR036236 -
Cpe10g00600 491 MobiDBLite consensus disorder prediction 254 276 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe10g00600 Cpe14g00555 CCT
Cpe10g00600 Cpe14g00555 ECH
Cpe10g00600 Cpe19g00801 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00139 Cpe-Chr2:691915 Cpe10g00600 Cpe-Chr10:3504977 1.78E-131 dispersed
Cpe02g00263 Cpe-Chr2:1362081 Cpe10g00600 Cpe-Chr10:3504977 5.49E-112 dispersed
Cpe03g00175 Cpe-Chr3:867681 Cpe10g00600 Cpe-Chr10:3504977 5.52E-115 dispersed
Cpe07g00434 Cpe-Chr7:2791390 Cpe10g00600 Cpe-Chr10:3504977 1.12E-124 dispersed
Cpe08g01104 Cpe-Chr8:8347530 Cpe10g00600 Cpe-Chr10:3504977 9.00E-116 dispersed
Cpe09g00622 Cpe-Chr9:4502966 Cpe10g00600 Cpe-Chr10:3504977 1.10E-108 dispersed
Cpe10g00600 Cpe-Chr10:3504977 Cpe14g00555 Cpe-Chr14:3522231 2.18E-139 dispersed
Cpe12g00615 Cpe-Chr12:6100750 Cpe10g00600 Cpe-Chr10:3504977 5.61E-114 dispersed
Cpe17g00872 Cpe-Chr17:6760175 Cpe10g00600 Cpe-Chr10:3504977 1.62E-110 dispersed
Cpe19g00403 Cpe-Chr19:3582056 Cpe10g00600 Cpe-Chr10:3504977 2.19E-113 dispersed
Cpe10g00598 Cpe-Chr10:3500010 Cpe10g00600 Cpe-Chr10:3504977 0 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50130 PF00096 zf-C2H2 0.0049 CL0361 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe10g00600 K25869 - csv:101217597 714.916