Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe10g00614 ATGGATTCCAATACGCTTTTGGACCCAATGGAGATGAAGGTCGGAGAACTCTTGAAGGAATTTCAGCTTGACTACTCCGCTGCTCTTGTTAAGCTCGTTGAGGACACAGTGTCAACTATAAAAAAAGCAATTAAACTCATTCCAGAGGACTTGAAGGTTACTGCGGCCGCAGCTCCGGGTTTTATCAGGGATATTGGCGCAGACAAAGTGGAATTCAAATTTAGGAAGCCAAAATCAATTAAAATCGGTGGTAGTTATGCCTTTCAAGGCATTGCAAAACCTGATGTAAATGTTGATCTTTTAGTTGGCTTGCCAAAGGAGTGTTTCCACGAGAAAGACTACCTCAATTACCGGTACCATGCTAAAAGGTTCCTTTACCTCTGCACAATCAAAAAGTATTTGAACTCATCTTCAATGTTTTCAAAGGTTGAATGGTCCACACTTCAGAATGAGGCTCGAAAACCTGTCTTAATTGTCCATCCAGCTTTGGAAGAGCTGAAGGAAGCTCCTGGATTCTTTGTCAGAATAATTCCAACAATAGCAGCATCCTTTTTTAGCATTTCAAAATTGAATCTCAAACGAAACAACATCCATGCCTTGAACCAAGGGAGCTTACTTGCAGCTACACCTAAGTATAACACTAGCATTTTGGAAGATATGTACTTCGAGGATACTTCAGAAATGGTTAAGAAGCCTTTTCTTGAATCAAAAAGTTTGTTAGAAACTTTAATTCTACTAAAGGTTTGGGCTCGGCAGAGAGCTTCAATATATGTGCATGATTGCTTGAACGGATTTTTAATAGCTGTAATATTATCATACCTCATTACTCAAAATAAAATAAATCATTCAATGACGACAATTCAGATGTTCCGTGTTGCCGTGAAATTTATTGCCTCTTCGAATTTATGGAATCACGGGCTCTATTTTAAGCTTGGACGTCAGAGCACTATTTCAAAGGAGGAAAAGAAGCAATATAAAGATTTATTTCCTGTGGTCATCTGCAATCCGTCTTCCAACTTTAACATTGCATTTCGACTATCACAGTCAGGTTTCGCTGAGCTGATATGCCTCAACTTTCAGCTTCAAGATGAGGCTGCTTTGGCACTTGCATGCTTGGAGAAATGCAGCAACGGTGGATTTGAAGAGGTTTTTATGACCAAAATTGACTTTGCTGTTAAATATGACCATTGCATTAGATTGAATTTGAGGGGACAAGTCGAGTTATATGCATCAGGCTTTTGTATGGATGATGAGTGTTGGAGACTATATGAGCAGAAAGTACATGGGATCTTAAGTCAAGGCCTGACTGATAGAGCAAAATTCATTCGTGTTTCCTGGAGGAACACGGAACCAGGATGCACTATTGAAAATGGATTATCAGTATTTGATACGCAGCCATTGCTTGTTGGAATTTCAATTAGCTCTGTGGAAAAAGCTTTTCGTGTGGTCGATATTGGTCCTAATGCTGATAACAAAGAAGATGCCCTAAAGTTCCGGAGATTTTGGGGTGAAAAGGCTGAGCTCAGGAGATTTAAAGATGGCAGAATTGCAGAAAGCACAGTTTGGGAAACTGATCAATGGACGAGACATCTCATTTTGAAGAGAATTGTGGAATATATTTTTGTTCGGCACCTTTCACCGATGTCAAAAGACCGCATTATGCATGCTGTGGATCAGATTGATTTCTCCCTGCTCCATGGTTCTGGAGATCCAATAACATTTTCTGGAAGTTTGCTTGCGGCTTTTGAAGTTTTATCAAAGCGATTACGTTCCATTGAAGACATTCCTTTGAAGGTGTCTGCCGTACAGCCTTTAGACTCAGCTTTCAGGTATACATCTGTTTATCCTCCTGAACCTCACCCACTAGCAGACGAAAAGACAAGTGATCTGCGAATACAGCAAAAGCTTGCTCCATCCTGCATTCAGCCACTGGAACTGGAAGGCTCTGGGAACTGGCCAACTGATGAGGTAGCAATTGAAAAAACCAAAACAGCCTTCCTTCTTAAAATTGGAGAGAGTCTGCAGAATATTCGGGGGATGGCGTGTATTGCTTCTGAAGATTCTGTTAATGTACTTGTCTCTGGTTATGCCTTCCACCTAAAAATTTGGCATGAAAAAGGCCTGAGCTTGGTGAATAAGGAATTTGGAAATGAATTATCAAATCGGATCTCCTCAACAGATAAGCAACTTTTTATTGAAAGTCAGCATTCAAGCATGATTAGTGGATTACAGGCTCGTCACTCAATATATGGACCGGTTGTTAGGTTGGCAAAAAGATGGATAGCCTCACATTTCTTTTCAGCATGCTTGGTAGAGGAAGCAGTTGAACTGTTGGTAGCATCAATTTTCCTGAAGCCTCTACCCTTTCATGCACCACTTTCTCGAGTCACAGGTTTTTTAAGGTTCCTAAGATTACTGTCGGAATATGACTGGACTTTTTCTCCATTGATTATTGACATAAACAATGATTTGGGTGTGAACGAGGAGAAAGAAATAGCTGATAAATTTAACATGACACGAAAAGATTTGCAAGAAAATCCGCAAAGTGCAAGTCCTGCCATGTTCTTAGCAACAGCTTATGACAAGGCATCCGAGGCTTGGACCCGGTTCTCACCAAAATCATCGGAGTTAAAACGGTTGGTTGCTTATGCTAGAAGCAGCGCAGATTTGTTGAGTAGACTAATATTACAGCATCAGGTCGACTCTTTTCAGTGGGAGTGCCTTTTCCGAACACCATTGAGCAACTACGATGCTGTTATTCTTCTCCATAGAGATAAATTACCGTACCCACAACGCCTTCTCTTCCCATCTGAACTGAACCGAGGAATTCATGTCGCCAAAGGGAATCCTAGCAAGATCTTCTCTCCATTTTTGTTGCCTAAAAACTTGAAAGCAAGTTCTGAGAACATCAAGGACAAGCTTTTGAAAGAATTCTCCAACACTTTCAACTTATGGTATGACTCTTTGGGAGGCGATGCAATTGGACTAACTTGGGGGCAACACAGTTCAAAGAAGCGTGGGCGCGATGAAGCTGTTGAGGAAAAAGAACCAGCTGAAGTGCTAAAATCTGTTGGTGAAACTGGTAAAGGTCTAATGAGGAGTGTCTACCTACTCAAGGCGCCAAGACTCACGACTTAA 3138 40.98 MDSNTLLDPMEMKVGELLKEFQLDYSAALVKLVEDTVSTIKKAIKLIPEDLKVTAAAAPGFIRDIGADKVEFKFRKPKSIKIGGSYAFQGIAKPDVNVDLLVGLPKECFHEKDYLNYRYHAKRFLYLCTIKKYLNSSSMFSKVEWSTLQNEARKPVLIVHPALEELKEAPGFFVRIIPTIAASFFSISKLNLKRNNIHALNQGSLLAATPKYNTSILEDMYFEDTSEMVKKPFLESKSLLETLILLKVWARQRASIYVHDCLNGFLIAVILSYLITQNKINHSMTTIQMFRVAVKFIASSNLWNHGLYFKLGRQSTISKEEKKQYKDLFPVVICNPSSNFNIAFRLSQSGFAELICLNFQLQDEAALALACLEKCSNGGFEEVFMTKIDFAVKYDHCIRLNLRGQVELYASGFCMDDECWRLYEQKVHGILSQGLTDRAKFIRVSWRNTEPGCTIENGLSVFDTQPLLVGISISSVEKAFRVVDIGPNADNKEDALKFRRFWGEKAELRRFKDGRIAESTVWETDQWTRHLILKRIVEYIFVRHLSPMSKDRIMHAVDQIDFSLLHGSGDPITFSGSLLAAFEVLSKRLRSIEDIPLKVSAVQPLDSAFRYTSVYPPEPHPLADEKTSDLRIQQKLAPSCIQPLELEGSGNWPTDEVAIEKTKTAFLLKIGESLQNIRGMACIASEDSVNVLVSGYAFHLKIWHEKGLSLVNKEFGNELSNRISSTDKQLFIESQHSSMISGLQARHSIYGPVVRLAKRWIASHFFSACLVEEAVELLVASIFLKPLPFHAPLSRVTGFLRFLRLLSEYDWTFSPLIIDINNDLGVNEEKEIADKFNMTRKDLQENPQSASPAMFLATAYDKASEAWTRFSPKSSELKRLVAYARSSADLLSRLILQHQVDSFQWECLFRTPLSNYDAVILLHRDKLPYPQRLLFPSELNRGIHVAKGNPSKIFSPFLLPKNLKASSENIKDKLLKEFSNTFNLWYDSLGGDAIGLTWGQHSSKKRGRDEAVEEKEPAEVLKSVGETGKGLMRSVYLLKAPRLTT 1045
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3561766 3571500 - Cp4.1LG10g00770.1 Cpe10g00614 476151

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe10g00614 1045 Pfam Nrap protein domain 1 98 230 IPR035082 -
Cpe10g00614 1045 Pfam Nrap protein PAP/OAS1-like domain 5 747 909 IPR035370 -
Cpe10g00614 1045 Pfam Nrap protein domain 6 913 1035 IPR035371 -
Cpe10g00614 1045 Pfam Nrap protein PAP/OAS-like domain 241 387 IPR035367 -
Cpe10g00614 1045 Coils Coil 826 846 - -
Cpe10g00614 1045 Pfam Nrap protein domain 3 391 545 IPR035368 -
Cpe10g00614 1045 PANTHER NUCLEOLAR RNA-ASSOCIATED PROTEIN 8 1037 IPR005554 -
Cpe10g00614 1045 Gene3D - 217 390 - -
Cpe10g00614 1045 Pfam Nrap protein nucleotidyltransferase domain 4 575 744 IPR035369 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe10g00614 K14544 UTP22, NOL6; U3 small nucleolar RNA-associated protein 22 - csv:101219567 1839.31
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g975 . . . . . . . . . . Cma03g00748 . Car03g00683 . . . Cpe10g00614 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo03g00776 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009270 1 3 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 0 1 1 2 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe10g00614 Cpe_Chr10 FPKM 0.0 0.0 0.0 0.0 2.996085 2.902531 2.933701 0.0 0.0 0.0