Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe10g00616 ATGATATCATCTCAACCAATCATAACGCGACGTCTGTACTGCACTCCACTTGAATCCCTCCTCAAAACCCAGGTTCTACCCACAAATCATTTACCACCGCCGATGGCCAGAAGAACCCGCCGGAAGTTACTCTTACAGTCCGAGTCTCAAACCGAGGCCGATCCACCGTCTAAGATTTCGTTCCGAACTACAAAAATACGGAAGATTTCTTCCACTCAAAAACCGGACAAACCACAGATATCAACTCCTGGCGGAGGCGACCGGACTCGAGCATTCCCGAACCAGGATGGTCCTGTCAAATCTTTATCGTCTTCGGATGTAATTCGTACAGCGATCGATCATTTACGCCGTTCGGATCCCCTTCTGATAAGGCTATTAGATTCATGCGAATCCCCCAATTTCAAGTCCAATCCACCGTTTCTAGCCCTAACAAAGAGCATCCTCTACCAGCAGCTCGCTACGAAGGCCGCCGAATCGATTTACAATCGCTTCGCGTCGCTATGCGGCGGAGAGGCGGCAGTACTACCAGACGCCGTACTTGGACTCTCGCCTCAACAGCTGCGAGTAGTCGGAGTTTCGGGTAGAAAAGCAAGTTACCTCCATGACCTAGCGACCAAATTCATAGAGGGCAGTTTGTCGAATTCGTCGATTCTAGAGATGGACGACGAGACTCTACTGAGTGCGTTGACGGCGGTGAAGGGAATCGGCGTTTGGTCAGTGCACATGTTCATGATTTTTACTCTGCACCGGCCGGATGTGCTGCCGGTGGGGGATTTGGGCGTGAGAAAAGGGGTACAGAGGTTGTACGGACTGAAAGAATTGCCAAAGCCAGTGGAGATGGAGAAACTTTGTGAAAATTGGAAGCCGTACAGGTCAATGGGGGCTTGGTATATGTGGAGGCTGATGGAAATGAAGGAAATCGTGAAGGATGATGGGGATTTGAAGATGAACACGGCGAACGGCGGCGGCGTTGTAATGTGA 981 50.56 MISSQPIITRRLYCTPLESLLKTQVLPTNHLPPPMARRTRRKLLLQSESQTEADPPSKISFRTTKIRKISSTQKPDKPQISTPGGGDRTRAFPNQDGPVKSLSSSDVIRTAIDHLRRSDPLLIRLLDSCESPNFKSNPPFLALTKSILYQQLATKAAESIYNRFASLCGGEAAVLPDAVLGLSPQQLRVVGVSGRKASYLHDLATKFIEGSLSNSSILEMDDETLLSALTAVKGIGVWSVHMFMIFTLHRPDVLPVGDLGVRKGVQRLYGLKELPKPVEMEKLCENWKPYRSMGAWYMWRLMEMKEIVKDDGDLKMNTANGGGVVM 326
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3578926 3579906 + Cp4.1LG10g00640.1 Cpe10g00616 476153

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe10g00616 326 MobiDBLite consensus disorder prediction 48 79 - -
Cpe10g00616 326 Gene3D Hypothetical protein; domain 2 139 250 - -
Cpe10g00616 326 PANTHER DNA-3-METHYLADENINE GLYCOSYLASE 46 310 - -
Cpe10g00616 326 SMART endo3end 148 303 IPR003265 GO:0006284
Cpe10g00616 326 CDD ENDO3c 140 301 IPR003265 GO:0006284
Cpe10g00616 326 MobiDBLite consensus disorder prediction 46 103 - -
Cpe10g00616 326 Pfam HhH-GPD superfamily base excision DNA repair protein 145 289 IPR003265 GO:0006284
Cpe10g00616 326 Gene3D - 114 300 - -
Cpe10g00616 326 SUPERFAMILY DNA-glycosylase 137 301 IPR011257 GO:0003824|GO:0006281
Cpe10g00616 326 PANTHER HHH-GPD BASE EXCISION DNA REPAIR FAMILY PROTEIN 46 310 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe10g00616 K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] - csv:101219253 460.299
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe10g00616 Cpe-Chr10:3578926 Cpe02g00123 Cpe-Chr2:609847 8.04E-70 wgd
Cpe10g00616 Cpe-Chr10:3578926 Cpe06g00109 Cpe-Chr6:536354 1.62E-72 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g979 . . . Bda10g00135 . . . Bma15g00996 . . Cma03g00747 . Car03g00681 . Sed14g1122 . Cpe10g00616 Bhi03g01301 Tan03g1983 Cmetu08g0437 . Hepe04g1517 . . Cla01g01912 Cam01g1999 Cec04g1654 Cco04g1716 Clacu01g2018 Cmu01g1892 Cre04g1568 . . Cone6ag1624 . Lsi01g00672 . . Cme08g00849 . Blo06g00134 . . Bpe10g00120 . . . . Cmo03g00774 . . . . . . . . . . . . . . . . . . . . . . Csa06g03241 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011094 2 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe10g00616 Cpe_Chr10 FPKM 1.20073 1.190943 0.112162 0.0 5.198522 4.597599 6.081582 0.0 0.122416 0.0