Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe10g00617 ATGGACAATAGCATTCCTTTATCGGTAATTCGATACCGAGAATGTCTGAAGAATCACGCAGCAAGTACTGGAGGCTACGTTCTAGACGGCTGCGGCGAGTTCATGCCAAATGGAGAAGATGGAACTCCTGAGGCCTCTAAGTGTGCAGCTTGTGAATGCCATCGGAACTTTCACCGAAAAGAGATGAGAGACGAGCCGCTCTCGCAGCAAGCTTTCCTTGGTGCTTTCTTCATCTCCAACTCGGTCAGAAACAATGGCCATCGTAGTGATGGGATGCCAGTTCCACTCTCTCGTCACCATCATTTACCGGCAGTTCCAATTTCTTCGATGATGATGGCATTTGGAGGAGGAAGCAATGGAGCTCCGGATGAGTCTTCCAGTGAGGGCCTGAATATGTATTATCCATCTGATAATGGAGCCCGGGAGCTGTTCTGTCAGCAGACACAACTGATGAAGAAACGATTCAGGACAAAGTTCACACAGGAACAGAAGGAGAAGATGATAGAATTTGCTGAAAAGTTGGCCTGGAAGATTCAGAAACATGATGAACTAGAAATGCAGCAGTTCTGCGATGAGGTGGGCGTAAGGAGGCAAGTTTTCAAGGTTTGGATGCACAACAAAAAACAAGCCATGAAGAAGAAACACATGTAA 651 46.7 MDNSIPLSVIRYRECLKNHAASTGGYVLDGCGEFMPNGEDGTPEASKCAACECHRNFHRKEMRDEPLSQQAFLGAFFISNSVRNNGHRSDGMPVPLSRHHHLPAVPISSMMMAFGGGSNGAPDESSSEGLNMYYPSDNGARELFCQQTQLMKKRFRTKFTQEQKEKMIEFAEKLAWKIQKHDELEMQQFCDEVGVRRQVFKVWMHNKKQAMKKKHM 216
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3583021 3583671 + Cp4.1LG10g00650.1 Cpe10g00617 476154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe10g00617 216 Pfam ZF-HD protein dimerisation region 10 62 IPR006456 -
Cpe10g00617 216 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 7 7 214 - -
Cpe10g00617 216 CDD homeodomain 153 215 IPR001356 GO:0003677
Cpe10g00617 216 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 12 61 IPR006456 -
Cpe10g00617 216 Gene3D - 140 213 - -
Cpe10g00617 216 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 7 214 - -
Cpe10g00617 216 SUPERFAMILY Homeodomain-like 150 213 IPR009057 -
Cpe10g00617 216 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 11 62 IPR006456 -
Cpe10g00617 216 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 152 209 IPR006455 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe10g00617 Cpe19g00812 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe10g00617 Cpe-Chr10:3583021 Cpe11g00465 Cpe-Chr11:2623784 2.62E-58 dispersed
Cpe10g00617 Cpe-Chr10:3583021 Cpe11g00204 Cpe-Chr11:1107091 3.52E-62 wgd
Cpe10g00617 Cpe-Chr10:3583021 Cpe14g00529 Cpe-Chr14:3339623 1.38E-30 wgd
Cpe10g00617 Cpe-Chr10:3583021 Cpe19g00812 Cpe-Chr19:6085016 1.78E-121 wgd
Cpe10g00617 Cpe-Chr10:3583021 Cpe07g00420 Cpe-Chr7:2710667 1.84E-67 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50133 PF04770 ZF-HD_dimer 3.60E-29 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe10g00617 - - cmos:111453071 447.203