Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe10g00620 | ATGGGCAGCAGAACCAAATCGGCCAAGATGAACGATTTGATGACGAAATCGTTCTTAAGTTATGTGGAATTGAAGAAACAGGCGCAGAAGGAAGCCGCATGCGGCGGCGGGGGCTTCGACATTGAATCCGGCGGCCAAGAACTCAATCCGACGGAAGAACAGAACCTGTCTCTGTTTTTCGGACAAGTCGACGAAATCAAGACCCAAATGGAAGAGACAACCAATCTCTTGAACGACATTCAAAAACTAAATCAAGAAGCCAAATCAACCCACAACGCGAAAATCCTCCGCGGATTAAGAGACCGAATCGACTCTGATATGGTCTCAATCCTCCGCAGAGCAAAACTCCTTAAAGAAAAATTGGCCTCTCTCGACCAATCCAACGCCGTCAACCGCCTGGTATCCGTCGCATACGGCGAAGGAACCACCGTGGACCGGACAAGAACTTCAATCACCAACGGACTGAGAGTGAAATTGAGAGAAATGATGATGGAATTCCAGTGTTTGAGAGAAAAGGTTGTGGCAGATCACAAGGAGGATTTGAGAAGAAGATATTTTAGTGCAAATGGGGAACAACCCAGTGAAGAACAGATTGAGAAGATTATGTCTGGGAGTCTGAAATTGGATTCGTTTGGAGGGAATTTGAGCGAGGCCGAGTTGCGAGACCGAGTCAGGCACGAGTCAGTGATGGATATACAGAGGAGTTTGAATAAACTTCATCAAGTGTTTTTGGATATGGCGATTCTGGTTGAGAGTGAAGGGGAGAAGATAGAGAACATTGAGGAGAATGTGGCGAAAGCTGGGAAGTTCATCAATGGCGGAACTCGAAGCCTTTACTATGCGAACCAGATGAAGAGGAAGAACAAGAAGTGGGTGTATTGGATTTGGGCCGTCATTTTTGTTATATTGCTTATTTGCATTGTTTCAATGTTGGTCATTTAA | 942 | 45.54 | MGSRTKSAKMNDLMTKSFLSYVELKKQAQKEAACGGGGFDIESGGQELNPTEEQNLSLFFGQVDEIKTQMEETTNLLNDIQKLNQEAKSTHNAKILRGLRDRIDSDMVSILRRAKLLKEKLASLDQSNAVNRLVSVAYGEGTTVDRTRTSITNGLRVKLREMMMEFQCLREKVVADHKEDLRRRYFSANGEQPSEEQIEKIMSGSLKLDSFGGNLSEAELRDRVRHESVMDIQRSLNKLHQVFLDMAILVESEGEKIENIEENVAKAGKFINGGTRSLYYANQMKRKNKKWVYWIWAVIFVILLICIVSMLVI | 313 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 3594324 | 3595699 | - | Cp4.1LG10g00590.1 | Cpe10g00620 | 476157 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe10g00620 | 313 | Gene3D | - | 215 | 313 | - | - | |
| Cpe10g00620 | 313 | PANTHER | SYNTAXIN | 13 | 309 | IPR045242 | - | |
| Cpe10g00620 | 313 | SMART | tSNARE_6 | 214 | 281 | IPR000727 | - | |
| Cpe10g00620 | 313 | SMART | SynN_4 | 51 | 178 | IPR006011 | GO:0016020 | |
| Cpe10g00620 | 313 | CDD | SNARE_syntaxin1-like | 225 | 278 | - | - | |
| Cpe10g00620 | 313 | PANTHER | SYNTAXIN-112 | 13 | 309 | - | - | |
| Cpe10g00620 | 313 | SUPERFAMILY | t-snare proteins | 55 | 274 | IPR010989 | GO:0016020|GO:0016192 | |
| Cpe10g00620 | 313 | CDD | SynN | 59 | 206 | IPR006011 | GO:0016020 | |
| Cpe10g00620 | 313 | Pfam | Syntaxin | 59 | 254 | IPR006011 | GO:0016020 | |
| Cpe10g00620 | 313 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 219 | 281 | IPR000727 | - | |
| Cpe10g00620 | 313 | Coils | Coil | 63 | 90 | - | - | |
| Cpe10g00620 | 313 | Gene3D | - | 56 | 184 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe10g00620 | Cpe-Chr10:3594324 | Cpe10g01038 | Cpe-Chr10:6053022 | 1.72E-69 | dispersed | |
| Cpe10g00620 | Cpe-Chr10:3594324 | Cpe19g00189 | Cpe-Chr19:1539921 | 1.16E-70 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe10g00620 | K08486 | - | csv:101217836 | 518.85 |