Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe10g00623 ATGGACAATCTCTCCCATTCTCGCCTTCCCAACAGGGGTTCTACCTCGCTTTCTAAGAAAATCTGCAATGGCGGTCATGGCGCCGGGCATTTTGCAGCTCAAACTATCTATGATGACGTTTATGGCGGTCCTCCCAAGTTTGGAGTCTCTGCTTTGTCTCCTCGCTTCGAAGACTACGGTGAGATTTTCGGGAGCTTCCACGCCCTCCGTGCTTCCTCGATTCCGATTCTCGATCTTCCAGCTGTCGATGAATCCGAGGTCTTTTTCGACGCTCGGAGCTCTGCATTTGACTATGCGGAGGTTTTTGGAGGATTCGATGGTCTGGATTTTGCGATTTCTTATGAGGAACTGGTTGGTCCGTCCAGACGCGTTGACGATGCTTTTTCGGACGAAGCTTGGTATAACTACGTTTATTTTCTGCCGGATACTTGTTGGCTCTTGCTTTTGTTCGCTGATTTCTTGGCTGATGTGTTGAAACTTGAAATTGACCTTGAGGTGACTGTATATGGACTCCTGACCTATAGTCATAATAGTGACGAGTATGAAGTAGAATGCGGCTGTCTTGCTTTTGTCATTCACAGGACTCCAGCAGGAACTGAATCTTTGTCAGATTGTTCGGACCATTCCGGAAATTCTCGTTGTATGTCAAATGGAGACTCTAATCAGTCATGTGATGGAAGCACTGAGTTTTGCATATCGTACAGCAAGGTTAACAGCGAAAACATTGGACATATATCAAATGGGAAGATACACGTAACCCAGTTGGAGATGCTTCCTGGACACTCATATCTGGTTGATGAAGCAAATCCCTCACCCAAGGGAACAGATGGTGATCCATCACTGCTGACCAATGATGATAACTATCTCAATATAGATTTTGATACAGGAAAGGTGAAGGGAAAACATCCAAGGAACACTAGGCCACCCCCAGTGGACGGTAATGGCTCTGGACCATTATTAGAGGATAACCTTGTTTCTCAAAATGGATATGGTAGAGGTGTTTGTCGTTCTCATGAGGATTTCATAAGCGTATCTGAAATAAGCCTTAGAACTGAGCCCTCTCAAGTGCCACCACCTTCTCGACCACCTCCCAAGTTTGCTACCAAGAAGGGGGACTCCACGAAAATGACTTTGAGTTGTGGAGAAGCTGCTTCTGAAATAATTCCGGATGATCGTACTCTTCCTTTATTTCATGTGGAGGTAGATGCTAGCTCATCTGCAGCCGTCTCTGCTGCAGCTATGAAAGGAGCAATGGAAAAAGCTCTAGCACAGTTACAGAATGCAAAAGATTTGTGGGAGAGGAAAAAGGAAGGGGTCCATGGACGGATGAGACCGGATGCAAAAAGTGATATGAGAGAAAAGGAAGGAAATTTGACAAAGATTCCAAATAGATTCAAGAGTTTGGCCGATGAAAGTGTACAGATTATTGGGGAAATTCATGACAATGGAATGAATTTTCCTGCTAGAGAGGAGAGGCAAAAGGATGTGAGGGCAACTGAAGTTTGTTCAACACACTATGGAGGAGAGGAACTTTTAACAGCTGCTGAAAAGACCGTACCAATTAGAAGTGGGAGTAGATTTCTTGTGTCTGACAACTATGATTGCTGCAGTGAATGGAAAGATGCCACAGGGTTTTTTAAATTGGCCAGAGCAGATATATCCAGAAAGGAATTTGAGTCGATGAACAATGATGCGGTTCCCAACATTCTGGCTGGACAAATTAGAGTAGAGACCATCAATAAAGCATGGGAAAACGATAAAGATCAAGACAAGAGAGGGAAACCATTCCATACATTTCATGTTCTGAATGAGGAGGTGAAGAATTTGGAGAATATGGTTCATGGAAAGGAGGAAGATAAGATAAAACTAAAACCAAATAAAAACGAGACTAGGCAAAAAGAGCAGGTGAAATTAAAAATTCATCAAGATGTTTGTGATCTTGACGCAAATGATAGGAAATTTGGAGTTGCTCAAGAGTTTGTGGAAGTAAAAAGGCAAATATCTGATGCTAGTGAACTAGAGAAACATGAAAAACCTATTGAGTTTAGACAACTGGACAGCGGGCTAAAAGTTGAGCAACCTATTTCACCAAGGGATATTGAACAAGAAAAGAAAAAGGTTGTTAAAAGAAAGGAAAATGGAAATATTCTCAAGGAACCTCTCATTGAGAATGAGAAAAGAGAGATGTTCATTGAGGCTTCTGAAAGGGAAAAGCTTGAGCAAAAAATGAGAATGTTCCTCGAGCAACAAGAAAATAAGAAAAGACTGGATCTGGTTCTTGAGGATGACAACTTTAAGGAACAGATGATTCGTGGAAGACAACTGGAAGGAGTTCATGAGATGGATGATCATGGGAAAAAGGGAAAAGAGACTGCCAATGTTGGAGTAAGTGAGAGACCTGAATTAGCTCATGAGAGAGAAGATGACGACAAATGGCCACAAGATTTTCCGTACACAGAAGTATGTCAAAAAGGAGTTGATGATTCATTTCAGATTTTGAACATCGAAGGCATGCCAAAAGATGCGGGTAAGTGTGAAGTGACTCAGATGTTGGTTAAAGAATTTCAAGATAGTGAACATCTGAAGGGTATAAGCTTGGAGCATGATGAATTAGAGAGATTGGAGGACAGACACAAAGGAAACACAACAATACGATCTCAAGTATATGTGGAAATGAATGATTTGGGGATATCTGCTGCTGCAATAAAAATGAACGATGACAAAAACCACTTACCCGCGGGACTAGCATGTTCAACGGGAATGCATGAAAAATTCTCTCATGTAGATGAAGGTGAAGAGACGACTGCAGTCACAGTTAATGAAACTTCGTCCGGAAGTGGTGGAGCTGAAAATCTGGAACTTAACAAAAATGCTTGTGTGTCGAGTGCTTGCCAGGCAGAGGTAGAACATTATAAAGTTCCAGTTGAAATGGAAGATGCAAATATTCAGCTTTCTTTCAATGAATGGACCAAAAGAACAGTCGAAGAAACAAGCTTTCAACCCAAACTTGGACATACAGAAGCAGAACCAACTAATTCGGAAGATGAACTTTCATCTGAAAAGTCAACAAGCATGGATGAGGGAAAGAATGAAACTGAAGAGTGCGTTGTTAAGATGGAAGATATGAAAACATCTCTTCCTCTGGATAAAAATGATGAGAAAGCAGGCCAAGCTGATGTTTGCATGGAAGAGTTTTTAGGGAGAAAGAAGTTTGTTAACCGAATGGGTTCTGATCCTGAACATCCAGAAAGTAACTTGTTCTGTTGTCTGGAAGATAAAGTGAAGTCCTCTGATCAGGTTGAAGATAAGGGACAGAAAGTGTCAGTTCAGGGGTTCAATGTAAGGGCTGAGAAAGGAAGTGGATTGGAGTCAAGTAGGCCAAATATTTCAGAAAGGACACAAAAGAGCGGGGAATTCATGCGTGAGATCAATGTAAATCCGGCCACAGAAAGAAAGGAAAAGATCATAAACCAGAGCCATACATCTAAAGGAAAAGAAAGCGAGAGAGCGAGGAGCGAAGCAGAATTTGAGAATGATAGTCTTCAAAAATTGGAAGAAGAGAGGGAAAGGGAGAAAGAGAGAGAAAAGGATAGAATGCCTATTGACAGAATTGCTCTCGAACCACGTGATAGAGTAGGTGCCGAAACTCGTGAAAAGGCAGAAAGGGCTGCTCTGGAGAGGATGACTGCTGAAGCCCGACAAAGAGCATTGACAGAGGCACGCGAAAGATTGGAGAAGGCATGTGCAGAGGCAAGAGAAAATTCATTGGCTGGAAAGGCAACTATGGAGGCAAGGGTAAAGGCAGAGCGTGCAGCCGTAGAAAGAGCAACTGCAGAGGCCAGGGAACGAGCTGCAGAGAAAGTCATGTCTGACAAGACTTCCTTTGGGGTGAGAGAGAGAATGGAAAGATCTGTTTCTGACAAATTCTCTGCTTCTAACATAAATATTGAAATGAGACAGAAGTCTTCATCCTCCGGTCAGCCCAGCCTTCAATCTCAGAGTTTTGGCACTTCCATTGCTTCAAGATATGCCTATTACTCGGCTTACGATGAGAGGAAGGAGGGTGTTGATGGTGAATCGCCACAAAGGTGTAAAGCCAGATTAGAGAGGCATCAAAGAACAGCAGAACGTGCAGCTAAAGCTCTGGCAGAAAAAAATATGCGTGATCTTCTTGCACAAAGAGAGCAAGCTGAGAGAAATAGATTGGCTGACACATTGGATGCTGATGTTAGGAGATGGTCAAGTGGGAAGGAAGGAAAATTGCGTGCCTTGCTTTCTACATTGCAATATATCCTGGGACCTGATAGTGGTTGGCAGCCAATTCCCTTAACGGAAGTTATAACTGCCGCTGCTGTAAAGAAAGCTTACAGGAAAGCCACTCTGTGTGTTCATCCGGACAAATTACAACAAAGAGGTGCAAGCATTCAGCAAAAGTATATATGTGAGAAGGTCTTTGATCTACTAAAGGAAGCTTGGAACAAATTCAACTCCGAAGAGCGGTAG 4503 42.66 MDNLSHSRLPNRGSTSLSKKICNGGHGAGHFAAQTIYDDVYGGPPKFGVSALSPRFEDYGEIFGSFHALRASSIPILDLPAVDESEVFFDARSSAFDYAEVFGGFDGLDFAISYEELVGPSRRVDDAFSDEAWYNYVYFLPDTCWLLLLFADFLADVLKLEIDLEVTVYGLLTYSHNSDEYEVECGCLAFVIHRTPAGTESLSDCSDHSGNSRCMSNGDSNQSCDGSTEFCISYSKVNSENIGHISNGKIHVTQLEMLPGHSYLVDEANPSPKGTDGDPSLLTNDDNYLNIDFDTGKVKGKHPRNTRPPPVDGNGSGPLLEDNLVSQNGYGRGVCRSHEDFISVSEISLRTEPSQVPPPSRPPPKFATKKGDSTKMTLSCGEAASEIIPDDRTLPLFHVEVDASSSAAVSAAAMKGAMEKALAQLQNAKDLWERKKEGVHGRMRPDAKSDMREKEGNLTKIPNRFKSLADESVQIIGEIHDNGMNFPAREERQKDVRATEVCSTHYGGEELLTAAEKTVPIRSGSRFLVSDNYDCCSEWKDATGFFKLARADISRKEFESMNNDAVPNILAGQIRVETINKAWENDKDQDKRGKPFHTFHVLNEEVKNLENMVHGKEEDKIKLKPNKNETRQKEQVKLKIHQDVCDLDANDRKFGVAQEFVEVKRQISDASELEKHEKPIEFRQLDSGLKVEQPISPRDIEQEKKKVVKRKENGNILKEPLIENEKREMFIEASEREKLEQKMRMFLEQQENKKRLDLVLEDDNFKEQMIRGRQLEGVHEMDDHGKKGKETANVGVSERPELAHEREDDDKWPQDFPYTEVCQKGVDDSFQILNIEGMPKDAGKCEVTQMLVKEFQDSEHLKGISLEHDELERLEDRHKGNTTIRSQVYVEMNDLGISAAAIKMNDDKNHLPAGLACSTGMHEKFSHVDEGEETTAVTVNETSSGSGGAENLELNKNACVSSACQAEVEHYKVPVEMEDANIQLSFNEWTKRTVEETSFQPKLGHTEAEPTNSEDELSSEKSTSMDEGKNETEECVVKMEDMKTSLPLDKNDEKAGQADVCMEEFLGRKKFVNRMGSDPEHPESNLFCCLEDKVKSSDQVEDKGQKVSVQGFNVRAEKGSGLESSRPNISERTQKSGEFMREINVNPATERKEKIINQSHTSKGKESERARSEAEFENDSLQKLEEEREREKEREKDRMPIDRIALEPRDRVGAETREKAERAALERMTAEARQRALTEARERLEKACAEARENSLAGKATMEARVKAERAAVERATAEARERAAEKVMSDKTSFGVRERMERSVSDKFSASNINIEMRQKSSSSGQPSLQSQSFGTSIASRYAYYSAYDERKEGVDGESPQRCKARLERHQRTAERAAKALAEKNMRDLLAQREQAERNRLADTLDADVRRWSSGKEGKLRALLSTLQYILGPDSGWQPIPLTEVITAAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWNKFNSEER 1500
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3607670 3614668 + Cp4.1LG10g00690.1 Cpe10g00623 476160

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe10g00623 1500 Coils Coil 1227 1254 - -
Cpe10g00623 1500 MobiDBLite consensus disorder prediction 1145 1227 - -
Cpe10g00623 1500 PANTHER AUXILIN, ISOFORM A 13 1495 - -
Cpe10g00623 1500 ProSiteProfiles dnaJ domain profile. 1436 1500 IPR001623 -
Cpe10g00623 1500 Coils Coil 722 756 - -
Cpe10g00623 1500 MobiDBLite consensus disorder prediction 1312 1333 - -
Cpe10g00623 1500 Gene3D DnaJ domain 1373 1500 IPR036869 -
Cpe10g00623 1500 Coils Coil 1365 1400 - -
Cpe10g00623 1500 SUPERFAMILY Chaperone J-domain 1358 1499 IPR036869 -
Cpe10g00623 1500 MobiDBLite consensus disorder prediction 780 816 - -
Cpe10g00623 1500 MobiDBLite consensus disorder prediction 997 1032 - -
Cpe10g00623 1500 Coils Coil 1167 1198 - -
Cpe10g00623 1500 Coils Coil 411 435 - -
Cpe10g00623 1500 MobiDBLite consensus disorder prediction 1008 1032 - -
Cpe10g00623 1500 CDD DnaJ 1448 1493 IPR001623 -
Cpe10g00623 1500 PANTHER AUXILIN/CYCLIN G-ASSOCIATED KINASE-RELATED 13 1495 - -
Cpe10g00623 1500 MobiDBLite consensus disorder prediction 294 321 - -
Cpe10g00623 1500 MobiDBLite consensus disorder prediction 1118 1227 - -
Cpe10g00623 1500 Coils Coil 599 619 - -
Cpe10g00623 1500 Coils Coil 1259 1279 - -
Cpe10g00623 1500 MobiDBLite consensus disorder prediction 780 815 - -
Cpe10g00623 1500 MobiDBLite consensus disorder prediction 348 374 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe10g00623 - - - bhj:120074172 2053.87
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe10g00623 Cpe19g00817 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe10g00623 Cpe-Chr10:3607670 Cpe19g00103 Cpe-Chr19:813701 1.65E-57 dispersed
Cpe10g00623 Cpe-Chr10:3607670 Cpe19g00817 Cpe-Chr19:6110756 0 wgd
Cpe10g00623 Cpe-Chr10:3607670 Cpe02g00118 Cpe-Chr2:588522 1.53E-21 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g999 Blo04g00910 Blo16g00053 . . Bpe15g00422 Bpe13g00437 . . . . . Cma07g00477 Car03g00673 Car07g00420 Sed14g1132 Cpe19g00817 Cpe10g00623 Bhi03g01324 Tan03g1999 Cmetu08g1509 . . . . Cla01g01920 . . . Clacu01g2027 Cmu01g1902 . . Cone12ag0778 Cone6ag1638 Cone9ag1558 Lsi01g00666 . . Cme08g00860 . . Bda11g01857 . . . Bma03g00985 Bma06g00115 . . Cmo07g00477 . . . . . . . . . . . . . . . . . . . . . Csa06g03256 Chy02g00633 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004571 1 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 2 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe10g00623 Cpe_Chr10 FPKM 0.805313 0.89283 1.176946 1.133143 27.277069 26.492384 24.138422 0.778471 0.67549 0.618191