Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe10g00628 ATGGAGATGGAAAACAAAGGGAACATATTCATAGACGCTACAAGTGGGGAGAATGTGATTGAAGCGTTTCGTAGGCAATTTGAAAAGGATTTTTCAGTGTTTTTGAAGTGTCGGGGAGAAGAAGTGGTAGGAGGTGGAGGAATGGCTCTTACACTGTTAGGAAGAACAGACAAAACTTATTGTTACGCTTATCAACTCTTGAATTTAGCTCTCAAGAAAATGGTTGCAGAGGGAATGGTGGAAGAGGAGAAAATGGATAGATTCAACATACCCAACTTCATGCCAACTCCACAAGAAATAAAAGATGAAATCCAAAAGGAAGGAAGCTTCATGATGAATCGTCTTGAAGTGTCCAGAATTGATTGGAACTTCTACAATATTGATGCAACAAGTGTGGATGTGGGTGTTGATAGCAGTTATAACATTGCAAAGTGCATTAGATCTGTGATGGAACCACTTATGATCCCTCACTTTGGAGAACCCATTATGGAACAACTATTTGATAGGTACAGAAAAATAGTTAAGGATGAGATGTCCAACAAAAAGATTGAGTTCATCAATCTCACTGTTTCTCTCATTAGAATATAA 588 38.1 MEMENKGNIFIDATSGENVIEAFRRQFEKDFSVFLKCRGEEVVGGGGMALTLLGRTDKTYCYAYQLLNLALKKMVAEGMVEEEKMDRFNIPNFMPTPQEIKDEIQKEGSFMMNRLEVSRIDWNFYNIDATSVDVGVDSSYNIAKCIRSVMEPLMIPHFGEPIMEQLFDRYRKIVKDEMSNKKIEFINLTVSLIRI 195
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3629748 3631957 - Cp4.1LG10g00580.1 Cpe10g00628 476165

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe10g00628 195 Gene3D - 4 181 IPR042086 -
Cpe10g00628 195 PANTHER S-ADENOSYL-L-METHIONINE:CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN 1 193 IPR005299 GO:0008168
Cpe10g00628 195 Pfam SAM dependent carboxyl methyltransferase 3 194 IPR005299 GO:0008168
Cpe10g00628 195 Gene3D Vaccinia Virus protein VP39 23 182 IPR029063 -
Cpe10g00628 195 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 4 194 IPR029063 -
Cpe10g00628 195 PANTHER SAM DEPENDENT CARBOXYL METHYLTRANSFERASE-RELATED 1 193 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe10g00628 K21483 SAMT; salicylate 1-O-methyltransferase [EC:2.1.1.274] - csv:101209890 274.248
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe10g00628 Cpe-Chr10:3629748 Cpe14g01032 Cpe-Chr14:8672843 2.02E-30 dispersed
Cpe10g00628 Cpe-Chr10:3629748 Cpe10g00629 Cpe-Chr10:3634408 1.99E-36 tandem
Cpe10g00628 Cpe-Chr10:3629748 Cpe14g00535 Cpe-Chr14:3370330 1.56E-30 wgd
Cpe10g00628 Cpe-Chr10:3629748 Cpe19g00820 Cpe-Chr19:6130001 4.94E-53 wgd
Cpe10g00628 Cpe-Chr10:3629748 Cpe02g00112 Cpe-Chr2:565755 1.78E-19 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1011 . . . . . . . . . . . . . . . . Cpe10g00628 . . . . . . . . . . . . . . Cone8ag0824 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000124 5 1 6 7 2 6 0 6 4 6 7 6 5 9 9 7 6 2 4 7 8 15 10 11 14 4 9 21 9 12 218
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe10g00628 Cpe_Chr10 FPKM 9.549761 10.039412 11.207989 10.450721 5.595597 4.676264 4.324276 21.891972 23.492599 27.140175