Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe10g00629 ATGGAAGTAGCTGAAGTTCTTCACATGAATGGAGGAGTTGGAGATCTTAGCTATGCTACCAATTCCCGTCTTCAGTCGAAGGTGATATCAATGACGATGCCAATTGCTGAGGAAGCCATTGTCAACCTCTACTGCTCCACTTTTCCAACCACTTTAACCATCGCGGATTTGGGCTGTTCTTCTGGACCCAACGCTTTGATGCCAGTGTCCCAACTCCTTGAGGCAGTCGAAAAGGCTCGTCGGAAGCTCCGCAAGGAACCAATCGAATATCAAGTTTTGTTAAACGACTTACCCGGAAATGACTTCAATACCATCTTCAAATCCCTGCCTAGCTTCCTTGAACGGTTGGAGGAGAATAAAAGAAACATTTTTATGGCTGAGACGAGCCCAGAGAGTGTGCTGAGAGCTTATTATGACCAATTCCAAAAGGACTTCTCCTTGTTTCTCAAGTGTCGTGCACAAGAATTGGGAAAGATAGAAGTGGAGAAATTGGAGAGCTTCAACATACCCAAATACAAGCCTACACCAACAGAAATAGAGATTGAGGTTGCAAAAGAAGGATCCTTTGTGGTGGATGGCATTAGGGTTTGGGACGTTTCCAGCAATCAATTCAGCAACAACGCATTAGACGGTTTCAAGAGTAGCAGCGACAACGTAGCAAAGGGCATAAGGGCTATAGCTGAACCAATTCTTGCAAGCCATTTTGGAGACCAAATTATGGATGAATTGTTCATCAAATACGGTGAGATCATAGCAGACCGTAAGGCAAAAGAGAAACCTAGTCTTGTCAATGTCACTGTTTCCCTCACTAAACCAAAGTGA 822 44.16 MEVAEVLHMNGGVGDLSYATNSRLQSKVISMTMPIAEEAIVNLYCSTFPTTLTIADLGCSSGPNALMPVSQLLEAVEKARRKLRKEPIEYQVLLNDLPGNDFNTIFKSLPSFLERLEENKRNIFMAETSPESVLRAYYDQFQKDFSLFLKCRAQELGKIEVEKLESFNIPKYKPTPTEIEIEVAKEGSFVVDGIRVWDVSSNQFSNNALDGFKSSSDNVAKGIRAIAEPILASHFGDQIMDELFIKYGEIIADRKAKEKPSLVNVTVSLTKPK 273
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3634408 3637699 + Cp4.1LG10g00700.1 Cpe10g00629 476166

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe10g00629 273 Gene3D - 116 136 IPR042086 -
Cpe10g00629 273 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 1 271 IPR029063 -
Cpe10g00629 273 Gene3D Vaccinia Virus protein VP39 170 259 IPR029063 -
Cpe10g00629 273 PANTHER S-ADENOSYL-L-METHIONINE:CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN 157 271 IPR005299 GO:0008168
Cpe10g00629 273 PANTHER S-ADENOSYL-L-METHIONINE:CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN 117 156 IPR005299 GO:0008168
Cpe10g00629 273 PANTHER S-ADENOSYL-L-METHIONINE:CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN 1 115 IPR005299 GO:0008168
Cpe10g00629 273 Gene3D - 158 258 IPR042086 -
Cpe10g00629 273 Gene3D Vaccinia Virus protein VP39 21 111 IPR029063 -
Cpe10g00629 273 Gene3D - 6 20 IPR042086 -
Cpe10g00629 273 PANTHER SAM DEPENDENT CARBOXYL METHYLTRANSFERASE-RELATED 157 271 - -
Cpe10g00629 273 PANTHER SAM DEPENDENT CARBOXYL METHYLTRANSFERASE-RELATED 117 156 - -
Cpe10g00629 273 PANTHER SAM DEPENDENT CARBOXYL METHYLTRANSFERASE-RELATED 1 115 - -
Cpe10g00629 273 Gene3D Vaccinia Virus protein VP39 137 156 IPR029063 -
Cpe10g00629 273 Pfam SAM dependent carboxyl methyltransferase 38 120 IPR005299 GO:0008168
Cpe10g00629 273 Pfam SAM dependent carboxyl methyltransferase 157 271 IPR005299 GO:0008168
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe10g00629 K21483 SAMT; salicylate 1-O-methyltransferase [EC:2.1.1.274] - csv:101206474 315.849
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe10g00629 Cpe-Chr10:3634408 Cpe19g00820 Cpe-Chr19:6130001 4.46E-109 dispersed
Cpe10g00628 Cpe-Chr10:3629748 Cpe10g00629 Cpe-Chr10:3634408 1.99E-36 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1014 . . . . . . . . . . . . . . . . Cpe10g00629 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000124 5 1 6 7 2 6 0 6 4 6 7 6 5 9 9 7 6 2 4 7 8 15 10 11 14 4 9 21 9 12 218
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe10g00629 Cpe_Chr10 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0