Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe10g00639 ATGAGTGCGAGATATAATATTGGTGTTTGTTCTTTACATTTACTACTCTTCACTGCTTTCACTAGTGTTCTTTTACAGGCTGTTGAAACGAATGCAATTGCAGTGCCAAGTTCCAGTTGCTATGTTTTTGACAATTCTAGTCACGTCATTGACTTTGATTCTGACTTGGTGGTTCGGTTTTGCAAAGATGTGGAAAGTAGATCACAACAGACGGGATATGTGGATTTTGGTCGATTTGACAAATTCAATTATTTTGTCTCTGGTTCAGGACATGCCAACTTTGTTCAAGGTTATTACTACGGTGACCTGACTTCTTGTGAGCAGAGTTATGACAAATTGGGGAGGACTGCACAGGTAAATGTTATATGTGGAGGTTGTTTAAATGGACGATGTAAAGGTGGTCTCGGATGCATCTGCAATATCACTTATGAGTCCAGTTGCAGAGTTATTGTCGACTTAGCCATCCCTTGTGTGATACAAGGCCCACGTGTTTTCAAAGGATTTACTGTTGGCTTTCACCCTAGATCCTGGGAAATTGTTTACAATGGTTTAACTCAGTTAGGCTTTGAGAAGCCACACCGTGCATTCAGCTTCAGCACAGAGCAGACTGGTGTGGTTCTTCATATGACTGCCATTGCATCACTTTCCTCTTTGGTACAGAAACCAATCATTCAGGTTTTTCCAGAAAATGGACTTGAGGTGAAAGTGTCAGGTTCAGGGGCAACTGGGAGCTACCCTACAACTCTGTCACCCTCAATGTTGATGATTAACTGGAGATGTGTTATTGCCAGAGATGTTCCATATGAAGTCAATGTCACGATCCCTGTGGCTGATTATGAACCTATTATTTTTTTTCTTACCAAGACGTGTGAAAAAAGGCAGGACGTACAAGGAGATTCTATGAAAGGATGGGCCACATTTGGAATACTCTCTTGCATATTCATAGTCGTAGCATCACTATTTTGCTGTGGAGGATTTGTTTATAAGGCACGAATGCAAGGCCAGCGTGGAATTGATGCATTGCCGGGCATGGCACTACTATCCGCCTGCTTGGAAACTGCGAGTGGTGCAGGACAAAGCTACCCGAGAGCTGAAGGCATCAACAGTGGGTTCGTCAGTGAAGCCTCCTGGGATCGTCCACCATCCTCTTCCTCTTCTCGACGGACATGGACACCGACTGAGAAAAATTATGGTTCAATATGA 1203 43.31 MSARYNIGVCSLHLLLFTAFTSVLLQAVETNAIAVPSSSCYVFDNSSHVIDFDSDLVVRFCKDVESRSQQTGYVDFGRFDKFNYFVSGSGHANFVQGYYYGDLTSCEQSYDKLGRTAQVNVICGGCLNGRCKGGLGCICNITYESSCRVIVDLAIPCVIQGPRVFKGFTVGFHPRSWEIVYNGLTQLGFEKPHRAFSFSTEQTGVVLHMTAIASLSSLVQKPIIQVFPENGLEVKVSGSGATGSYPTTLSPSMLMINWRCVIARDVPYEVNVTIPVADYEPIIFFLTKTCEKRQDVQGDSMKGWATFGILSCIFIVVASLFCCGGFVYKARMQGQRGIDALPGMALLSACLETASGAGQSYPRAEGINSGFVSEASWDRPPSSSSSRRTWTPTEKNYGSI 400
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3675501 3682842 + Cp4.1LG10g00480.1 Cpe10g00639 476176

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe10g00639 400 MobiDBLite consensus disorder prediction 375 400 - -
Cpe10g00639 400 PANTHER G-PROTEIN COUPLED RECEPTOR 10 400 - -
Cpe10g00639 400 MobiDBLite consensus disorder prediction 372 400 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe10g00639 - - - csv:101207936 718.383
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe10g00639 Cpe19g00826 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe10g00639 Cpe-Chr10:3675501 Cpe19g00826 Cpe-Chr19:6168505 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1044 . . . . . . Bma09g00091 . . . Cma03g00717 Cma07g00464 Car03g00657 Car07g00411 . Cpe19g00826 Cpe10g00639 Bhi03g00913 . . . . . . . . . . . . . . . . Cone9ag1574 Lsi01g00642 . . Cme08g00889 . . . . . . . . . Cmo03g00743 Cmo07g00462 . . . . . . . . . . . . . . . . . . . . . Csa06g03284 Chy02g00612 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002272 2 6 1 2 1 2 3 1 1 1 1 1 3 2 1 3 1 2 3 2 2 2 2 1 2 2 1 5 2 2 60
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe10g00639 Cpe_Chr10 FPKM 98.980637 109.286102 88.73716 86.613258 139.857391 131.56456 139.835342 11.565819 11.407981 9.647793