Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe10g00641 ATGTGGCAGTGGGAGAATGCCACCGCCGGCGCCGTTGCTGGATTTGCCACTGTCGCCTCCGTGCATCCTCTAGATGTCGTCCGCACCCGGTTTCAAGTTTATGATGGCAGAGGATCGAATCTCCCAACTTACAAGAACACGGTTAATGCAATCCTCACCATTGCTCGGATGGAGGGCTTGAGAGGGCTATATGCGGGCTTCTATCCTGCAGTTCTCGGATCAACTGTTTCTTGGGGTTTATATTTCTTCTTCTATGGCAGAGCCAAACAAAGATATTCTGACTATGGAAAGAAGAACTTGACTCCTACTCTTCATCTTGCTTCTGCAGCAGAGGCAGGAGCTTTGGTTTGTTTTTGCACAAATCCAGTTTGGCTTGTGAAAACAAGAATGCAGCTTCAGAATCCTCTTCATCAAGCTCAACCTTATTCTGGGCTATATGTCAATGCACTAGGAGAAAGGTTGTGGAGTGTGGGTAGATGTGTTTGGTTGCTACAGCAGGTTTCTCATGGTGCCATTCAATTTACAGTTTACGAAGAACTCCGTAAAGTTATTGCCAACTCGAGGTATAAAGGAACCAGAGTGGATGCTCAAAGTTCTGGGGAATTACTGAATTCGGTTGATTATGCTGTCCTTGGAGGATCTTCTAAAATTGCTGCCATGCTTCTGACATATCCATTTCAAGTTATTCGAGCTCGATTGCAGCAAAGACCAGGCAATGATGGTACACCTAGATACATGGATAGTTTCCACGTTCTTAAGGAAACTGCACGGTTTGAGGGTATTCGTGGATTTTACAGGGGAATTACACCAAACCTTCTAAAGAATGTCCCTGCGGCTTCAATCACATTTGTTGTGTATGAAAACGTCTTAAAACTGCTCAAACTGACGAGACAAAAGGAATGA 903 44.74 MWQWENATAGAVAGFATVASVHPLDVVRTRFQVYDGRGSNLPTYKNTVNAILTIARMEGLRGLYAGFYPAVLGSTVSWGLYFFFYGRAKQRYSDYGKKNLTPTLHLASAAEAGALVCFCTNPVWLVKTRMQLQNPLHQAQPYSGLYVNALGERLWSVGRCVWLLQQVSHGAIQFTVYEELRKVIANSRYKGTRVDAQSSGELLNSVDYAVLGGSSKIAAMLLTYPFQVIRARLQQRPGNDGTPRYMDSFHVLKETARFEGIRGFYRGITPNLLKNVPAASITFVVYENVLKLLKLTRQKE 300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3690407 3696024 + Cp4.1LG10g00450.1 Cpe10g00641 476178

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe10g00641 300 ProSiteProfiles Solute carrier (Solcar) repeat profile. 203 292 IPR018108 -
Cpe10g00641 300 Gene3D Mitochondrial carrier domain 1 152 IPR023395 -
Cpe10g00641 300 ProSiteProfiles Solute carrier (Solcar) repeat profile. 100 183 IPR018108 -
Cpe10g00641 300 Pfam Mitochondrial carrier protein 4 93 IPR018108 -
Cpe10g00641 300 Pfam Mitochondrial carrier protein 206 294 IPR018108 -
Cpe10g00641 300 Pfam Mitochondrial carrier protein 100 186 IPR018108 -
Cpe10g00641 300 Gene3D Mitochondrial carrier domain 160 300 IPR023395 -
Cpe10g00641 300 ProSiteProfiles Solute carrier (Solcar) repeat profile. 1 91 IPR018108 -
Cpe10g00641 300 SUPERFAMILY Mitochondrial carrier 4 288 IPR023395 -
Cpe10g00641 300 PANTHER BNAA09G07970D PROTEIN 2 296 - -
Cpe10g00641 300 PANTHER MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED 2 296 IPR044712 GO:0006862|GO:0055085
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe10g00641 K15115 SLC25A32, MFT; solute carrier family 25 (mitochondrial folate transporter), member 32 - csv:101204160 513.072
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe10g00641 Cpe19g00828 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00910 Cpe-Chr7:8147753 Cpe10g00641 Cpe-Chr10:3690407 5.43E-19 dispersed
Cpe10g00641 Cpe-Chr10:3690407 Cpe12g00913 Cpe-Chr12:7892461 1.86E-39 dispersed
Cpe11g00940 Cpe-Chr11:7947186 Cpe10g00641 Cpe-Chr10:3690407 3.96E-19 dispersed
Cpe10g00641 Cpe-Chr10:3690407 Cpe19g00828 Cpe-Chr19:6180337 3.40E-36 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1048 . . . . . . . Bma15g00985 . . Cma03g00714 . . . . Cpe19g00828 Cpe10g00641 Bhi03g00909 . . . . . . Cla01g01945 . Cec04g1692 . Clacu01g2055 Cmu01g1932 . . Cone12ag0781 . . Lsi01g00639 . . Cme08g00891 . Blo06g00145 . . Bpe10g00131 . . . . Cmo03g00741 . . . . . . . . . . . . . . . . . . . . . . Csa06g03287 Chy02g00609 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010733 0 3 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe10g00641 Cpe_Chr10 FPKM 0.0 0.0 6.850742 5.79557 28.434734 25.655954 24.779676 1.737896 0.902783 1.545985