Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe10g00643 ATGGCAGTAGCAGAGGGACGAGTCATCCACTGCAACACCATTGATTCATGGAACCACCAAATTCAGAAGGGCAATGCCTCTCAGGAACTGATAGTGGTGGATTTCACTGCATCATGGTGTGGTCCGTGTCGGTTCATTGCGCCTTTTCTAGACGAGCTTGCTCAGAAATTTCCCAGTGTCACATTTCTCAAGGTTGATGTTGATGATCTGGAGTCGGTAGCTAAAGATTGGGGGGTGGAGGCAATGCCTACTTTTATGTTCCTGAAAGAGGGAAGAATTGTGGACAAGGTGGTTGGAGCTAAGAAGGAAGAACTGCAGCAGACTGTATTCAAGCACATGGCTGCTACTTCTTCTGCCTGA 360 47.78 MAVAEGRVIHCNTIDSWNHQIQKGNASQELIVVDFTASWCGPCRFIAPFLDELAQKFPSVTFLKVDVDDLESVAKDWGVEAMPTFMFLKEGRIVDKVVGAKKEELQQTVFKHMAATSSA 119
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3704531 3706068 - Cp4.1LG10g00360.1 Cpe10g00643 476180

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe10g00643 119 ProSitePatterns Thioredoxin family active site. 32 50 IPR017937 -
Cpe10g00643 119 PRINTS Thioredoxin family signature 31 39 - -
Cpe10g00643 119 PRINTS Thioredoxin family signature 39 48 - -
Cpe10g00643 119 PRINTS Thioredoxin family signature 78 89 - -
Cpe10g00643 119 ProSiteProfiles Thioredoxin domain profile. 1 114 IPR013766 -
Cpe10g00643 119 PANTHER THIOREDOXIN 4 118 - -
Cpe10g00643 119 CDD TRX_family 26 109 - -
Cpe10g00643 119 Gene3D Glutaredoxin 1 118 - -
Cpe10g00643 119 Pfam Thioredoxin 12 109 IPR013766 -
Cpe10g00643 119 PANTHER THIOREDOXIN H-TYPE-LIKE ISOFORM X1 4 118 - -
Cpe10g00643 119 SUPERFAMILY Thioredoxin-like 6 114 IPR036249 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe10g00643 K03671 trxA; thioredoxin 1 - csv:101203181 201.06
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe10g00643 Cpe19g00834 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00153 Cpe-Chr1:876375 Cpe10g00643 Cpe-Chr10:3704531 1.67E-38 dispersed
Cpe09g00142 Cpe-Chr9:839415 Cpe10g00643 Cpe-Chr10:3704531 2.61E-36 dispersed
Cpe10g00643 Cpe-Chr10:3704531 Cpe10g01007 Cpe-Chr10:5781968 6.43E-34 dispersed
Cpe13g00660 Cpe-Chr13:6223255 Cpe10g00643 Cpe-Chr10:3704531 6.87E-16 dispersed
Cpe18g00234 Cpe-Chr18:3985762 Cpe10g00643 Cpe-Chr10:3704531 3.88E-17 transposed
Cpe10g00643 Cpe-Chr10:3704531 Cpe11g00225 Cpe-Chr11:1208177 1.53E-31 wgd
Cpe10g00643 Cpe-Chr10:3704531 Cpe19g00834 Cpe-Chr19:6208021 3.23E-80 wgd
Cpe10g00643 Cpe-Chr10:3704531 Cpe02g00101 Cpe-Chr2:505349 1.24E-45 wgd
Cpe10g00643 Cpe-Chr10:3704531 Cpe06g00089 Cpe-Chr6:438847 8.76E-28 wgd
Cpe10g00643 Cpe-Chr10:3704531 Cpe07g00394 Cpe-Chr7:2546677 1.11E-29 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1058 . . . . . . . . . . Cma03g00711 Cma07g00455 Car03g00652 Car07g00403 Sed14g1166 Cpe19g00834 Cpe10g00643 Bhi03g00902 Tan03g2039 Cmetu08g0881 . Hepe04g1561 . . Cla01g01949 Cam01g2038 Cec04g1696 Cco04g1761 Clacu01g2060 Cmu01g1937 Cre04g1611 . . Cone6ag1656 Cone9ag1580 Lsi01g00634 . . Cme08g00895 . . . . . Bpe06g00034 . . . Cmo03g00737 Cmo07g00452 . . . . . . . . . . . . . . . . . . . . . Csa06g03291 Chy02g00605 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009315 0 1 0 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 2 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe10g00643 Cpe_Chr10 FPKM 5.892231 7.146265 9.14073 4.324638 13.941168 9.672851 11.226998 5.608356 7.230796 4.308941