Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe10g00648 ATGGAGGCTGCGTTGAAGATGGGTCTCATCAACAAACCCAGCCCCAAACTTCATTTGGATGAGCTTCGGTCTGCAAACCCGCAAAGCTCTGCATCCCCCTCCTCCGATTACATTTTTGTAGACCAACTTTTCAACTTTTCAAATGAAGAAGATGGGTTTGTTGAAGAAGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGCAGAGGGTGAAGAGAAAAACAACCATTCCTCTGTTTCTGCTCCCCTGCAACTTCAACAATACCGTGAGAGCGACGAAATTTCCAACCACAGCTCCACCAATTCCTCTGGAGATGTCTTTTGGTCTGTTTCTTCAAGAGATTTTGAAGACCTCGAATGGCTGTCCCATCTCGTCGCCGACTCCACCCAAGAAGAATACTCTGCCGCACCACTGAACTGCTCTGTTTTTTTGACAGAGAAACCCAATAGTTACCAAAAGGAACCAACCCACCACGCCCCCACCCTTCCGAATTTTGAATCTAATCTCAACACCCCATTTCCCTCAAAGCCAAGAAGCAAGCGAGCAAAAATCTCCGGCCGAGTCTGGTCATTAACGAATTCAATTTCTTCTCCATCGTTATACCCACCACAGCCGAAGAAACCAAAGAAAAACCCAGCAGAGGAGGGTTCCGGCAGGGTGCAGGCGCCGCGGCGGTGTAGCCATTGCGGTGTTCAAAAAACCCCACAGTGGCGAGCTGGTCCGCTGGGGTCCAAGACTCTGTGTAATGCGTGCGGTGTACGGTTCAAATCCGGGCGGCTTTTTCCCGAATATAGACCGGCTTGTAGCCCGACGTTCTCGAGCGAGCTTCATTCAAACCACCACCGGAAAGTACTGGAGATGCGACAGAAAAAGGAAACGGAGACGGCCCACTCCGGTCCAGACCCAACCCCGTAG 912 51.1 MEAALKMGLINKPSPKLHLDELRSANPQSSASPSSDYIFVDQLFNFSNEEDGFVEEEEEEEEEEEEAEGEEKNNHSSVSAPLQLQQYRESDEISNHSSTNSSGDVFWSVSSRDFEDLEWLSHLVADSTQEEYSAAPLNCSVFLTEKPNSYQKEPTHHAPTLPNFESNLNTPFPSKPRSKRAKISGRVWSLTNSISSPSLYPPQPKKPKKNPAEEGSGRVQAPRRCSHCGVQKTPQWRAGPLGSKTLCNACGVRFKSGRLFPEYRPACSPTFSSELHSNHHRKVLEMRQKKETETAHSGPDPTP 303
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3733494 3734405 + Cp4.1LG10g00520.1 Cpe10g00648 476185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe10g00648 303 Pfam GATA zinc finger 225 258 IPR000679 GO:0006355|GO:0043565
Cpe10g00648 303 MobiDBLite consensus disorder prediction 49 105 - -
Cpe10g00648 303 MobiDBLite consensus disorder prediction 1 35 - -
Cpe10g00648 303 PANTHER GATA TRANSCRIPTION FACTOR 30 193 - -
Cpe10g00648 303 PANTHER GATA TRANSCRIPTION FACTOR 195 295 - -
Cpe10g00648 303 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 219 281 - -
Cpe10g00648 303 ProSiteProfiles GATA-type zinc finger domain profile. 219 255 IPR000679 GO:0006355|GO:0043565
Cpe10g00648 303 MobiDBLite consensus disorder prediction 273 303 - -
Cpe10g00648 303 MobiDBLite consensus disorder prediction 149 174 - -
Cpe10g00648 303 SMART GATA_3 219 273 IPR000679 GO:0006355|GO:0043565
Cpe10g00648 303 MobiDBLite consensus disorder prediction 74 105 - -
Cpe10g00648 303 Gene3D - 216 296 IPR013088 GO:0006355|GO:0008270
Cpe10g00648 303 MobiDBLite consensus disorder prediction 149 226 - -
Cpe10g00648 303 MobiDBLite consensus disorder prediction 275 296 - -
Cpe10g00648 303 Coils Coil 53 75 - -
Cpe10g00648 303 PIRSF Txn_fac_GATA_plant 20 300 IPR016679 GO:0003677|GO:0005634|GO:0045893
Cpe10g00648 303 ProSitePatterns GATA-type zinc finger domain. 225 250 IPR000679 GO:0006355|GO:0043565
Cpe10g00648 303 MobiDBLite consensus disorder prediction 185 199 - -
Cpe10g00648 303 CDD ZnF_GATA 224 272 IPR000679 GO:0006355|GO:0043565
Cpe10g00648 303 MobiDBLite consensus disorder prediction 50 69 - -
Cpe10g00648 303 PANTHER GATA TRANSCRIPTION FACTOR 30 193 - -
Cpe10g00648 303 PANTHER GATA TRANSCRIPTION FACTOR 195 295 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe10g00648 Cpe-Chr10:3733494 Cpe12g00660 Cpe-Chr12:6422073 5.71E-43 dispersed
Cpe10g00648 Cpe-Chr10:3733494 Cpe14g00550 Cpe-Chr14:3491573 1.04E-61 wgd
Cpe10g00648 Cpe-Chr10:3733494 Cpe05g01292 Cpe-Chr5:9021238 2.72E-41 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50136 PF00320 GATA 1.50E-16 CL0167 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe10g00648 - K21630 bhj:120072849 429.869