Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe10g00648 ATGGAGGCTGCGTTGAAGATGGGTCTCATCAACAAACCCAGCCCCAAACTTCATTTGGATGAGCTTCGGTCTGCAAACCCGCAAAGCTCTGCATCCCCCTCCTCCGATTACATTTTTGTAGACCAACTTTTCAACTTTTCAAATGAAGAAGATGGGTTTGTTGAAGAAGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGCAGAGGGTGAAGAGAAAAACAACCATTCCTCTGTTTCTGCTCCCCTGCAACTTCAACAATACCGTGAGAGCGACGAAATTTCCAACCACAGCTCCACCAATTCCTCTGGAGATGTCTTTTGGTCTGTTTCTTCAAGAGATTTTGAAGACCTCGAATGGCTGTCCCATCTCGTCGCCGACTCCACCCAAGAAGAATACTCTGCCGCACCACTGAACTGCTCTGTTTTTTTGACAGAGAAACCCAATAGTTACCAAAAGGAACCAACCCACCACGCCCCCACCCTTCCGAATTTTGAATCTAATCTCAACACCCCATTTCCCTCAAAGCCAAGAAGCAAGCGAGCAAAAATCTCCGGCCGAGTCTGGTCATTAACGAATTCAATTTCTTCTCCATCGTTATACCCACCACAGCCGAAGAAACCAAAGAAAAACCCAGCAGAGGAGGGTTCCGGCAGGGTGCAGGCGCCGCGGCGGTGTAGCCATTGCGGTGTTCAAAAAACCCCACAGTGGCGAGCTGGTCCGCTGGGGTCCAAGACTCTGTGTAATGCGTGCGGTGTACGGTTCAAATCCGGGCGGCTTTTTCCCGAATATAGACCGGCTTGTAGCCCGACGTTCTCGAGCGAGCTTCATTCAAACCACCACCGGAAAGTACTGGAGATGCGACAGAAAAAGGAAACGGAGACGGCCCACTCCGGTCCAGACCCAACCCCGTAG 912 51.1 MEAALKMGLINKPSPKLHLDELRSANPQSSASPSSDYIFVDQLFNFSNEEDGFVEEEEEEEEEEEEAEGEEKNNHSSVSAPLQLQQYRESDEISNHSSTNSSGDVFWSVSSRDFEDLEWLSHLVADSTQEEYSAAPLNCSVFLTEKPNSYQKEPTHHAPTLPNFESNLNTPFPSKPRSKRAKISGRVWSLTNSISSPSLYPPQPKKPKKNPAEEGSGRVQAPRRCSHCGVQKTPQWRAGPLGSKTLCNACGVRFKSGRLFPEYRPACSPTFSSELHSNHHRKVLEMRQKKETETAHSGPDPTP 303
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3733494 3734405 + Cp4.1LG10g00520.1 Cpe10g00648 476185

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe10g00648 303 Pfam GATA zinc finger 225 258 IPR000679 GO:0006355|GO:0043565
Cpe10g00648 303 MobiDBLite consensus disorder prediction 49 105 - -
Cpe10g00648 303 MobiDBLite consensus disorder prediction 1 35 - -
Cpe10g00648 303 PANTHER GATA TRANSCRIPTION FACTOR 30 193 - -
Cpe10g00648 303 PANTHER GATA TRANSCRIPTION FACTOR 195 295 - -
Cpe10g00648 303 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 219 281 - -
Cpe10g00648 303 ProSiteProfiles GATA-type zinc finger domain profile. 219 255 IPR000679 GO:0006355|GO:0043565
Cpe10g00648 303 MobiDBLite consensus disorder prediction 273 303 - -
Cpe10g00648 303 MobiDBLite consensus disorder prediction 149 174 - -
Cpe10g00648 303 SMART GATA_3 219 273 IPR000679 GO:0006355|GO:0043565
Cpe10g00648 303 MobiDBLite consensus disorder prediction 74 105 - -
Cpe10g00648 303 Gene3D - 216 296 IPR013088 GO:0006355|GO:0008270
Cpe10g00648 303 MobiDBLite consensus disorder prediction 149 226 - -
Cpe10g00648 303 MobiDBLite consensus disorder prediction 275 296 - -
Cpe10g00648 303 Coils Coil 53 75 - -
Cpe10g00648 303 PIRSF Txn_fac_GATA_plant 20 300 IPR016679 GO:0003677|GO:0005634|GO:0045893
Cpe10g00648 303 ProSitePatterns GATA-type zinc finger domain. 225 250 IPR000679 GO:0006355|GO:0043565
Cpe10g00648 303 MobiDBLite consensus disorder prediction 185 199 - -
Cpe10g00648 303 CDD ZnF_GATA 224 272 IPR000679 GO:0006355|GO:0043565
Cpe10g00648 303 MobiDBLite consensus disorder prediction 50 69 - -
Cpe10g00648 303 PANTHER GATA TRANSCRIPTION FACTOR 30 193 - -
Cpe10g00648 303 PANTHER GATA TRANSCRIPTION FACTOR 195 295 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe10g00648 - - K21630 bhj:120072849 429.869
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe10g00648 Cpe-Chr10:3733494 Cpe12g00660 Cpe-Chr12:6422073 5.71E-43 dispersed
Cpe10g00648 Cpe-Chr10:3733494 Cpe14g00550 Cpe-Chr14:3491573 1.04E-61 wgd
Cpe10g00648 Cpe-Chr10:3733494 Cpe05g01292 Cpe-Chr5:9021238 2.72E-41 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1071 Blo04g00899 Blo16g00063 Bda04g00030 . . Bpe13g00427 . . . . Cma03g00704 . Car03g00646 . Sed07g1682 . Cpe10g00648 Bhi03g00894 Tan03g2048 Cmetu04g1399 . Hepe04g1570 . . Cla01g01957 Cam01g2046 Cec04g1704 Cco04g1769 Clacu01g2068 Cmu01g1945 Cre04g1619 . . . . Lsi01g00626 . Chy07g01272 Cme08g00904 . . Bda11g01846 . . Bpe06g00027 Bma03g00976 . . Cmo03g00730 . . Cma20g00811 . . . . Bhi10g01940 Tan05g1237 . . Hepe08g0974 . . . . . . . . . . Csa06g03299 Chy02g00597 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe11g00511 CCT,ECH 66 328 C2C2-Gata Transcription Factor Family AT5G25830 51.9 1.7e-60 230.3
Cpe06g00489 CCT,CST,ECH 59 320 C2C2-Gata Transcription Factor Family AT5G25830 51.4 1.0e-57 221.1
Cpe14g00550 . 28 305 C2C2-Gata Transcription Factor Family AT5G66320 50.7 8.5e-63 238.0
Cpe10g00648 . 108 291 C2C2-Gata Transcription Factor Family AT5G66320 50.9 2.7e-45 179.9
Cpe06g00489 CCT,CST,ECH 48 317 C2C2-Gata Transcription Factor Family AT4G32890 50.4 1.1e-53 207.6
Cpe07g00206 CCT,CST,ECH 49 247 C2C2-Gata Transcription Factor Family AT4G32890 50.5 8.3e-41 164.9
Cpe05g00222 . 1 511 C2C2-Gata Transcription Factor Family AT4G17570 52.5 5.3e-133 471.9
Cpe08g00714 . 1 489 C2C2-Gata Transcription Factor Family AT4G17570 53.6 2.6e-132 469.5
Cpe15g00304 . 1 492 C2C2-Gata Transcription Factor Family AT4G17570 50.7 3.7e-126 449.1
Cpe08g00714 . 1 490 C2C2-Gata Transcription Factor Family AT5G47140 50.4 5.6e-113 405.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014154 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 0 1 0 23
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50136 PF00320 GATA 1.50E-16 CL0167 Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe10g00648 Cpe_Chr10 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.219325 0.042526 0.083466