Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe10g00658 GAATCCGAATCCGAATCCGAATCCGAATCCGACCCGAATGAGAATCCGATGCGGTTTTTTGTACGTCTCTTCCGAACTTGGCATTTGCCGCTGTTGAATAAGGAAAACATTTGCAATTTCGCTCTATATTTTGCGGTCCACGAATTGATTGTTCGTCACTTGCCTATGGCGATTAGTCACCAGCATTTGAAACTGGAAGACCCTTTTCTTCATAACTACAAGCCCTCAGAGCTACGGATCGCTTCTGAGTTTCTCACCACTTGGCTTCCGTTTCTTTCGAGAGATCTCTGCCGGAACTGCACCAAATTGCTCTCGGATCGAATCCGCGCCCTCGACCCAGCTGCCCGTACCGACGAGAATTCAAGTTCTACACCACCAGTTGAAGTCATGCATGAGAGTAATGGGAATCAGAACGATGCTTGTGATGCAAATTCTCTTGGAAGTTGGAAAGATGAAGCGGAAACAAATTCATTGGGAAGTTGGAAGGACGGCATAAATGAAGGGAATGAAGCTGATGGGGTACCTGAAACTTCTTCTAGCATACCATCCTCTAAAGTAGTTTCCACCAAGACCTCAGGGCCTCGAATGTCGTGGGCTGATATGACTCAGGAAGATGAACTAGAAGAAGAAGAGGAAGATGAGTATGAATCAGAAAAAAGAGTTGTCAGTGTTAATGAGTCCACAAGGAAATTAACAATATCAAAGGTTATTGAGAAGCCAAAGCTGTCTAGAGAGCAGAGAGAGCACATCAGGTTCATAAATGTTGGACGGAAGAAAGATTTTATTTGTCTGGAGAGGTTTAAAGGGAAATTAGTAAATATTCTTGAAGGACTTGAGCTTCATACAGAACGAACATTTTCAGCTCCGAAAAAGTGGATGAAGGGGAAGGGACGTGTGACTCTGCAGTTCGGGTGCTGTTACAATTATGCACCTGATAAAAATGGCAATCCTCCTGGAATTCTTAGAAGCGAAATTGTGGACCCAATACCTTCTCTTTTTAAGGTGATCATTAGAAGGTTGGTTAGGTGGCATGTGCTTCCTCCAACATGTGTTCCTAATAGTTGCATTGTGAACATCTACGACGAAGGGGACTGTATTCCTCCCCATATTGACAGCCACGATTTTGTCAGACCGTTTTGCACTGTATCGTTCCTCAGTGAATGCAATATTGTTTTTGGAACAAACCTTTCTATTGTAGGACCAGGTGAATTTTCTGGGCCAATTGCAATCCCTCTACCTGTGGGGTCTGTTCTTGTGTTAAATGGAAATGGAGCTGATGTTGCTAAACATTGTGTACCTGCAGTCCCTACAAAGAGAATGAACTGGAGATGGCTATGGCAGGCGATTTTGTTGCTTCAG 1359 43.86 ESESESESESDPNENPMRFFVRLFRTWHLPLLNKENICNFALYFAVHELIVRHLPMAISHQHLKLEDPFLHNYKPSELRIASEFLTTWLPFLSRDLCRNCTKLLSDRIRALDPAARTDENSSSTPPVEVMHESNGNQNDACDANSLGSWKDEAETNSLGSWKDGINEGNEADGVPETSSSIPSSKVVSTKTSGPRMSWADMTQEDELEEEEEDEYESEKRVVSVNESTRKLTISKVIEKPKLSREQREHIRFINVGRKKDFICLERFKGKLVNILEGLELHTERTFSAPKKWMKGKGRVTLQFGCCYNYAPDKNGNPPGILRSEIVDPIPSLFKVIIRRLVRWHVLPPTCVPNSCIVNIYDEGDCIPPHIDSHDFVRPFCTVSFLSECNIVFGTNLSIVGPGEFSGPIAIPLPVGSVLVLNGNGADVAKHCVPAVPTKRMNWRWLWQAILLLQ 453
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3779231 3783505 + Cp4.1LG10g00320.1 Cpe10g00658 476195

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe10g00658 453 MobiDBLite consensus disorder prediction 114 221 - -
Cpe10g00658 453 PANTHER RNA DEMETHYLASE ALKBH9B 60 282 - -
Cpe10g00658 453 PANTHER RNA DEMETHYLASE ALKBH9B 283 440 - -
Cpe10g00658 453 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN-RELATED 60 282 IPR044842 GO:0003729|GO:0006402|GO:0032451
Cpe10g00658 453 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN-RELATED 283 440 IPR044842 GO:0003729|GO:0006402|GO:0032451
Cpe10g00658 453 MobiDBLite consensus disorder prediction 116 163 - -
Cpe10g00658 453 MobiDBLite consensus disorder prediction 172 198 - -
Cpe10g00658 453 Pfam 2OG-Fe(II) oxygenase superfamily 322 435 IPR027450 -
Cpe10g00658 453 Gene3D - 262 445 IPR037151 -
Cpe10g00658 453 SUPERFAMILY Clavaminate synthase-like 283 441 - -
Cpe10g00658 453 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 351 449 IPR005123 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe10g00658 K10767 ALKBH5; mRNA N6-methyladenine demethylase [EC:1.14.11.53] - csv:101203292 690.649
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe10g00658 Cpe19g00854 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe10g00658 Cpe-Chr10:3779231 Cpe12g01004 Cpe-Chr12:8413101 7.68E-22 dispersed
Cpe10g00658 Cpe-Chr10:3779231 Cpe19g00854 Cpe-Chr19:6300896 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1105 . . . Bda10g00181 . . . . . . Cma03g00691 . Car03g00636 Car07g00380 Sed14g1184 Cpe19g00854 Cpe10g00658 Bhi03g00874 Tan03g2066 Cmetu06g2758 . Hepe04g1586 . . . . . . . . . . . . Cone9ag1602 Lsi01g00607 . . Cme08g00920 . . . . Bpe10g00151 . . . . Cmo03g00717 Cmo07g00430 . . . . . . . . . . . . . . . . . . . . . Csa06g03318 Chy02g00580 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003475 1 1 1 0 1 2 2 2 2 1 2 2 1 2 1 2 2 3 2 1 1 1 1 2 2 1 2 3 2 2 48
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe10g00658 Cpe_Chr10 FPKM 4.220779 1.583143 1.233168 1.786059 2.096512 2.799252 3.437303 1.657575 1.812074 2.21177