Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe10g00659 ATGGAGCCCAAACAGGGCAACGAGGAAGGCAGCAATGGGAAAGGCCAAGCGGGGTTCTTGTGCAGGCAAAGCAGCACGCGGTGGACTCCCACAACCGACCAAATTAGAATCTTGAAGGAGCTTTATTACAACAATGGCGTTCGGTCCCCAAGCGCTGATCAAATTCAGAGAATCTCTGCTAGGCTTAGACAGTACGGTAAAATTGAAGGCAAGAACGTTTTTTATTGGTTTCAGAACCATAAGGCTCGTGAGAGGCAGAAAAAACGGTTCACTTCTGGTTCTGATCATCATCTTTCTAAACAACAGCAACAACAACATCCTTCCCTGATTCCTTCCACTCTTTGGAAGCCTCAAGATTCCTCGTCCTCGTTCCACAACAGATACAGACCCAGTAAGGAATACGTCTCTATTGCTCCGTCTTCTCCGGTTATGGTTGCCGTGGGGCATATGGGAAATTACGGATATGGGTCTTCCACTTTTGACAACAGTTTCAGAGAGTGCTCGATATTGTCGGGAGGAAGTAGCAGCGTAATTGGGTCTCGAAGCCACAACATGGGATCATGGATCGGCGTCGATCGGCGTTCTTCCCCGGCGGCTGATATATTTGAAAAGACAAAATATGTTGAAGAATACATGGAAGACGAGGAGGAGGAACAAGAGATCGAAACTCTCCCCCTCTTCCCCATCCATGGTGGTGATCGGAATCTTAGTGGATTCTGCAGCATGCGACAGGAATATTCCGACAGCTTCTACACCACCACTTGGTATGGCAGCTCGGATGACGGCGCCGCCGGTTCTCGAACTTCCCTCGAGCTCAGCCTAAACTCTTATGCCACTATCTCACCGGATGATGGAATGTGA 861 48.9 MEPKQGNEEGSNGKGQAGFLCRQSSTRWTPTTDQIRILKELYYNNGVRSPSADQIQRISARLRQYGKIEGKNVFYWFQNHKARERQKKRFTSGSDHHLSKQQQQQHPSLIPSTLWKPQDSSSSFHNRYRPSKEYVSIAPSSPVMVAVGHMGNYGYGSSTFDNSFRECSILSGGSSSVIGSRSHNMGSWIGVDRRSSPAADIFEKTKYVEEYMEDEEEEQEIETLPLFPIHGGDRNLSGFCSMRQEYSDSFYTTTWYGSSDDGAAGSRTSLELSLNSYATISPDDGM 286
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3786192 3787536 + Cp4.1LG10g00260.1 Cpe10g00659 476196

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe10g00659 286 Gene3D - 25 91 - -
Cpe10g00659 286 MobiDBLite consensus disorder prediction 1 25 - -
Cpe10g00659 286 MobiDBLite consensus disorder prediction 85 126 - -
Cpe10g00659 286 Pfam Homeodomain 25 86 IPR001356 GO:0003677
Cpe10g00659 286 ProSiteProfiles 'Homeobox' domain profile. 21 87 IPR001356 GO:0003677
Cpe10g00659 286 MobiDBLite consensus disorder prediction 96 126 - -
Cpe10g00659 286 PANTHER PROTEIN WUSCHEL 1 279 - -
Cpe10g00659 286 SUPERFAMILY Homeodomain-like 21 90 IPR009057 -
Cpe10g00659 286 CDD homeodomain 26 88 IPR001356 GO:0003677
Cpe10g00659 286 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 1 279 IPR044555 GO:0003700|GO:0099402
Cpe10g00659 286 MobiDBLite consensus disorder prediction 9 25 - -
Cpe10g00659 286 SMART HOX_1 23 91 IPR001356 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe10g00659 - - - csv:101203055 395.971
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g02525 Cpe-Chr1:20715580 Cpe10g00659 Cpe-Chr10:3786192 3.27E-30 dispersed
Cpe10g00659 Cpe-Chr10:3786192 Cpe20g00149 Cpe-Chr20:844047 1.96E-27 dispersed
Cpe10g00659 Cpe-Chr10:3786192 Cpe19g00855 Cpe-Chr19:6310682 1.75E-102 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1106 . . Bda04g00024 . . . . . . . Cma03g00690 Cma07g00431 Car03g00635 Car07g00379 . . Cpe10g00659 Bhi03g00873 . . . . . . Cla01g01974 Cam01g2067 Cec04g1726 Cco04g1792 Clacu01g2088 Cmu01g1965 Cre04g1639 Cone8ag0846 Cone12ag0720 . . Lsi01g00606 . . Cme08g00921 . . . . . . . . . Cmo03g00716 Cmo07g00429 . . . . . . . . . . . . . . . . . . . . . Csa06g03319 Chy02g00579 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007879 1 2 0 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 0 1 1 1 1 1 2 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50140 PF00046 Homeodomain 1.40E-17 CL0123 Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe10g00659 Cpe_Chr10 FPKM 1.718459 2.078727 10.52556 11.592424 5.625839 5.064313 4.42366 32.080658 33.845791 30.870291