Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe10g00671 ATGACGGCTAATTCCTTTCTCCTTCTTCCATTTGGATTCCTGCTCTGTTTTCTCGTCTCCGGCAGTTTCGAAGCCGGAATCGTCACCGTCGACGTCAAAACCGCCAAGAACCTCCTCCATTCCGGCTACGCTTTTCTCGACGTCAGGACTGTCGAGGAGTTCAAGGAAGGGCACGTAGCGACGGAGAAGATCGTCAATATTCCGTATCAATTCAATTCTCCAGACGGTAGGGTGAAGAATGATCGGTTTCTGGAGGACGTGTCGGCGGTCTTTAAGAAAGACGACCGCCTCGTCGTGGGTTGTCGAAGTGGTGTAAGATCTTTGCTTGCCATTGAAGACCTCCGTAATGATGGCTTCAAGCATTTGACAGATCTGGGCGGAGGGCATCTGGCTTGGCTGGAGTATGGATTTCCTGTGGCTAAGCCAAAAGTGAAAACTGATCCAAAGAGTGTGGACCTTAAGGCTGACGAGCTTTGA 477 50.52 MTANSFLLLPFGFLLCFLVSGSFEAGIVTVDVKTAKNLLHSGYAFLDVRTVEEFKEGHVATEKIVNIPYQFNSPDGRVKNDRFLEDVSAVFKKDDRLVVGCRSGVRSLLAIEDLRNDGFKHLTDLGGGHLAWLEYGFPVAKPKVKTDPKSVDLKADEL 158
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3866268 3867882 + Cp4.1LG10g00310.1 Cpe10g00671 476208

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe10g00671 158 PANTHER THIOSULFATE SULFURTRANSFERASE 18 7 143 - -
Cpe10g00671 158 Pfam Rhodanese-like domain 33 133 IPR001763 -
Cpe10g00671 158 PANTHER THIOSULFATE SULFURTRANSFERASE 18 7 143 IPR044684 GO:0003824
Cpe10g00671 158 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 13 141 IPR036873 -
Cpe10g00671 158 ProSiteProfiles Rhodanese domain profile. 39 141 IPR001763 -
Cpe10g00671 158 SMART rhod_4 30 138 IPR001763 -
Cpe10g00671 158 Gene3D - 17 140 IPR036873 -
Cpe10g00671 158 CDD RHOD 34 132 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe10g00671 - - K15692 cmax:111477892 301.212
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe10g00671 Cpe-Chr10:3866268 Cpe10g00698 Cpe-Chr10:4009981 5.25E-28 dispersed
Cpe10g00671 Cpe-Chr10:3866268 Cpe10g00672 Cpe-Chr10:3868007 5.76E-25 tandem
Cpe10g00671 Cpe-Chr10:3866268 Cpe16g00310 Cpe-Chr16:4983915 2.37E-15 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1128 . . . . . . . . . . . . . . . . Cpe10g00671 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo03g00703 . . Cma20g00760 . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002828 1 2 0 0 1 1 3 2 2 1 1 1 1 2 1 2 2 2 3 1 2 2 2 1 3 3 1 4 2 3 52
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe10g00671 Cpe_Chr10 FPKM 63.019836 70.422043 36.631386 36.159527 16.084484 13.59254 14.854512 72.164993 67.040184 69.771294