Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe10g00688 | ATGCAATTACAGGAGCCGATTGAGGAGTTTTGCTGCTTTGAATTCTTGATGAACTTTCTGAGGGCTTGCTGGCTGCCATCCTCGGCCAATATCGTACACAGCGGTTCGGATTCAGCAGGTCGTCGTGAAGGCTTACTATGGTACAAGGATATTGGACAGCACATGAATGGTGAATTTTCAATGGCTGTTGTCCAGGCTAATAACTTGCTTGAGGATCAAAGCCAGATCGAATCGGGTTCATTGAGCTTGGTCGAATCCGGGCCATATGGAACCTTTATTGGTGTTTATGATGGTCATGGTGGACCGGAAGCATCAAATTACATATATGATAATCTTTTCCAGCATCTAAAAAGGTTCACCTCAGAACAACAATCAATGTCATCTGATGTGATAAAGAAAGCATTTCAAGCTACAGAGGAAGGGTTCATTTCTTTAGTGACTAAACAATGGCAAATGAAGCCCCAAATTGCAGCTGTTGGTTCATGCTGCCTGGTTGGTGTGATCTGTGGTGGCACCCTTTACATAGCCAACCTTGGCGATTCCCGTGCCGTGCTTGGAAGGGTCATGCGTGCAACGGAGGAGGTTATCGCCGTGCAGCTATCAGCTGAGCATAATGTGAGCATAGAATCTGTCAGAAGGGAGATGCATTCTCTGCACCCAGATGACTCGCATATAGTAGTTTTGAAGCATAATGTATGGCGAGTAAAGGGCTTAATACAGGTA | 723 | 45.37 | MQLQEPIEEFCCFEFLMNFLRACWLPSSANIVHSGSDSAGRREGLLWYKDIGQHMNGEFSMAVVQANNLLEDQSQIESGSLSLVESGPYGTFIGVYDGHGGPEASNYIYDNLFQHLKRFTSEQQSMSSDVIKKAFQATEEGFISLVTKQWQMKPQIAAVGSCCLVGVICGGTLYIANLGDSRAVLGRVMRATEEVIAVQLSAEHNVSIESVRREMHSLHPDDSHIVVLKHNVWRVKGLIQV | 241 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 3957063 | 3958166 | + | Cp4.1LG10g00130.1 | Cpe10g00688 | 476225 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe10g00688 | 241 | PANTHER | ALPHABET, ISOFORM E-RELATED | 16 | 241 | - | - | |
| Cpe10g00688 | 241 | ProSitePatterns | PPM-type phosphatase domain signature. | 92 | 100 | IPR000222 | GO:0043169 | |
| Cpe10g00688 | 241 | Gene3D | - | 48 | 241 | IPR036457 | - | |
| Cpe10g00688 | 241 | SMART | PP2C_4 | 52 | 241 | IPR001932 | - | |
| Cpe10g00688 | 241 | CDD | PP2Cc | 59 | 241 | IPR001932 | - | |
| Cpe10g00688 | 241 | SUPERFAMILY | PP2C-like | 67 | 240 | IPR036457 | - | |
| Cpe10g00688 | 241 | Pfam | Protein phosphatase 2C | 91 | 208 | IPR001932 | - | |
| Cpe10g00688 | 241 | PANTHER | PROTEIN PHOSPHATASE 2C 60-RELATED | 16 | 241 | - | - | |
| Cpe10g00688 | 241 | ProSiteProfiles | PPM-type phosphatase domain profile. | 58 | 241 | IPR001932 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe01g00222 | Cpe-Chr1:1248672 | Cpe10g00688 | Cpe-Chr10:3957063 | 5.52E-106 | dispersed | |
| Cpe01g01128 | Cpe-Chr1:6676303 | Cpe10g00688 | Cpe-Chr10:3957063 | 1.67E-105 | dispersed | |
| Cpe03g00147 | Cpe-Chr3:742758 | Cpe10g00688 | Cpe-Chr10:3957063 | 9.64E-106 | dispersed | |
| Cpe05g01363 | Cpe-Chr5:9586872 | Cpe10g00688 | Cpe-Chr10:3957063 | 1.88E-138 | dispersed | |
| Cpe08g01134 | Cpe-Chr8:8492012 | Cpe10g00688 | Cpe-Chr10:3957063 | 4.68E-105 | dispersed | |
| Cpe10g00688 | Cpe-Chr10:3957063 | Cpe15g00605 | Cpe-Chr15:6773776 | 8.60E-129 | dispersed | |
| Cpe03g00369 | Cpe-Chr3:1980533 | Cpe10g00688 | Cpe-Chr10:3957063 | 6.99E-81 | transposed | |
| Cpe11g00098 | Cpe-Chr11:526743 | Cpe10g00688 | Cpe-Chr10:3957063 | 8.78E-82 | transposed | |
| Cpe10g00688 | Cpe-Chr10:3957063 | Cpe14g01040 | Cpe-Chr14:8734462 | 4.36E-119 | wgd | |
| Cpe10g00688 | Cpe-Chr10:3957063 | Cpe16g00325 | Cpe-Chr16:5096653 | 7.62E-114 | wgd | |
| Cpe10g00688 | Cpe-Chr10:3957063 | Cpe19g00880 | Cpe-Chr19:6451702 | 8.08E-157 | wgd | |
| Cpe10g00688 | Cpe-Chr10:3957063 | Cpe08g01306 | Cpe-Chr8:9397628 | 4.43E-73 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe10g00688 | K01102 | - | csv:101219696 | 434.106 |