Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe10g00697 ATGAGTTCCTCCTGTATGCTTCAAGACCATGGCTTGCGCCCGGGGCTTGCTGCTGCAGAACAATCAATTCCCTACTGGAACAACAAGGCCGACAATGCATGGCAGCTCACGGCAGCCACCATGGTCGGCCTCCAAACTGTTCCGGGGCTGGTCATCCTCTATGGCAGCATGGTGAAGAAAAAATGGGCTGTCAACTCCGCTTTCATGGCACTCTATGGCTTCGCTTCTGTGCTCGTCTGTTGGGTGTTGTGGGCACATCGTATGGCATTCGGTGACCGATTGTTCTGGCTCATTGGTGTGCCTGGCGCAGCGCTGTCTGAAGGGTACCTTCTTTCACATTCTCCACAAGGCTGTTTTCCAATGGCTGACTACGTGTTTTTCCAGTTCGCTTTCGCCGCCATTACTGTCGTGTTGCTCGCCGGGTCCTTGCTGGGAAGGATGAATTTTGGTGCATGGATGCTTTTTGTTCCAATGTGGCTAACTGTTTGTTACACTGTTGGGGCATTCTGTATATGGGGGAATGGGTTTATTCAGAAGTACCTCATTGACTACGCCGGCGGCTATGTCATTCATCTTTCTTCTGGGGTGGCTGGTTTCACTGCCGCTTACTGGGTCGGGCCACGACACTCCCGCGACAGGCAGAGCTTCCCACCAAACAACATACTGCACATGGTATTCGGTGCAGGGTTTCTTTGGCTGGGCTGGACTGGATTCAATGGAGGAGCTCCATTTGCAGCGGGTCGGATTACGTCGCTAGCCATTTTGAACACGCATATTTGCACAGCAACAAGTCTGTTGATCTGGGTTTCAATGGACATCATAGTATACAAGAAAAGCTCTGTGATTGGTGCAGTTCAAGGGATCATCACTGGCCTTGTCTGTATCACTCCTGGTGCAGGGCTTGTGGACTCGGTCGCAGCTGTGGTGATGGGCGTGCTTGCTGGTTTGGTTCCATGGTACACCATGATGGTGCTGCACAGGAAGCTGGCATTCCTTCAGTGTGTCGACGATACTCTGGGTGTCTTCCACACACATGCTGTGGCTGGCTCCATGGGAGGACTCCTCACAGGTTTCTTTGCTAAACCCAGTCTTTTGAGAATGATGTATCCAGATTCACTATACGGTCCAGGCTTACTGTATGCCATCTCTAGTAGAAAGCTCAAAGATGGCCTCAAACAAATTGGCATCCAGTTCGCTGGAGCAGTGTTTATTACCCTCTGGAATGCCATCTTTACCAGCATTATCTGTTACCTGATTAGCCATATTGTTAACTTAAGAATGAAAGAAGAGGACCTGGAAATTGGCGACGATGCTGCTCATGGAGAAGAACCCTATGCGTTGTGGGGCGACGGAGAGAAGATGCCATCTTCCTTTCGTCTTCCACACACCCCTAGGTTCCCATCATTATGCAGGTGGGATTAG 1422 50.7 MSSSCMLQDHGLRPGLAAAEQSIPYWNNKADNAWQLTAATMVGLQTVPGLVILYGSMVKKKWAVNSAFMALYGFASVLVCWVLWAHRMAFGDRLFWLIGVPGAALSEGYLLSHSPQGCFPMADYVFFQFAFAAITVVLLAGSLLGRMNFGAWMLFVPMWLTVCYTVGAFCIWGNGFIQKYLIDYAGGYVIHLSSGVAGFTAAYWVGPRHSRDRQSFPPNNILHMVFGAGFLWLGWTGFNGGAPFAAGRITSLAILNTHICTATSLLIWVSMDIIVYKKSSVIGAVQGIITGLVCITPGAGLVDSVAAVVMGVLAGLVPWYTMMVLHRKLAFLQCVDDTLGVFHTHAVAGSMGGLLTGFFAKPSLLRMMYPDSLYGPGLLYAISSRKLKDGLKQIGIQFAGAVFITLWNAIFTSIICYLISHIVNLRMKEEDLEIGDDAAHGEEPYALWGDGEKMPSSFRLPHTPRFPSLCRWD 473
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4006149 4008886 - Cp4.1LG10g10310.1 Cpe10g00697 476234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe10g00697 473 PANTHER AMMONIUM TRANSPORTER 14 471 - -
Cpe10g00697 473 Pfam Ammonium Transporter Family 33 445 IPR024041 GO:0008519|GO:0016020|GO:0072488
Cpe10g00697 473 ProSitePatterns Ammonium transporters signature. 183 208 IPR018047 GO:0008519|GO:0016020|GO:0072488
Cpe10g00697 473 Gene3D Ammonium transporter AmtB like domains 12 448 IPR029020 -
Cpe10g00697 473 SUPERFAMILY Ammonium transporter 26 427 - -
Cpe10g00697 473 PRINTS Rhesus blood group protein signature 128 144 IPR002229 GO:0005887
Cpe10g00697 473 PRINTS Rhesus blood group protein signature 222 240 IPR002229 GO:0005887
Cpe10g00697 473 PRINTS Rhesus blood group protein signature 253 275 IPR002229 GO:0005887
Cpe10g00697 473 PRINTS Rhesus blood group protein signature 308 326 IPR002229 GO:0005887
Cpe10g00697 473 TIGRFAM amt: ammonium transporter 31 445 IPR001905 GO:0008519|GO:0016020|GO:0072488
Cpe10g00697 473 PANTHER AMMONIUM TRANSPORTER MEP2 14 471 IPR001905 GO:0008519|GO:0016020|GO:0072488
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe10g00697 Cpe-Chr10:4006149 Cpe11g00346 Cpe-Chr11:1878520 0 dispersed
Cpe10g00697 Cpe-Chr10:4006149 Cpe08g01238 Cpe-Chr8:8977126 1.89E-177 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe10g00697 K03320 - csv:101218977 903.279