Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe10g00724 ATGTTTCAGCAACAGAGTACTCATAATTCAAGCTTTCTTCAAAACAACTCATTAGTTCGTGATCAGAACATACCTTTTGATGCCAGCTCGATGGAACCCACAAATGGAAGCAATGATCCCAGCAACACCCCGAATTTGGCCTCAAAACAGAGATTGCGATGGACACATGATCTTCACGAACGATTCGTTAATGCAGTGGCACAACTTGGTGGTCCAGATCGTGCTACACCCAAAGGCGTCCTTCGAGTGATGGGTGTTCAAGGTCTAACGATATACCACGTTAAAAGCCACCTGCAGAAATATCGACTTGCAAAATACCTTCCCGACTCATCGTCTGATGGGAAAAAGGCTGACAAGAAGGATTCTATTGACGTTCTATCGAACATTGAGGGCTCGTCGGGAATGCAAATTACCGAAGCACTTAAGCTGCAGATGGAGGTACAGAGACAGCTACAGTTACGGATTGAAGCCCAAGGCAAGTACTTAAAGAAGATAATTGAAGAGCAACAAAAACTTAGTGGGGTTCTTTCAGGAGCAGCTCCAGTTGCCTCTTCCTTCTCAGCTCCTGCTTCTGGTGAGAACTGCCCAGAAACCGACAAGAACGACCCACCAACACCTGCGCCCACATCGGAGTTTCCTCGACAAGAGAAAGCATCAAAGGAACGTGCCCAAGCCAAGAGTGTCTCTATTGATGATTCTTTCTCATCTCGTCACGAACCATTGACGCCCGATTCTGGTTGTCATAGCTCCCCAAATGAGAGCCCAAAGCCAGTGAAGAAGCAAAGACAGTACCAGGATGGTGCATTTGCCAAATCAGAGATGATACTCGCACATCAGATACTGGAGTCAAGTTTAAACTCCACTCACAAGGGATCACGCTCTGTTTTTCCAGCCAGAGAAACGTTGGATCCTTCATCTGGACTATCTATAGGGGACGATGAGCAGTTTGACTAA 954 46.44 MFQQQSTHNSSFLQNNSLVRDQNIPFDASSMEPTNGSNDPSNTPNLASKQRLRWTHDLHERFVNAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLPDSSSDGKKADKKDSIDVLSNIEGSSGMQITEALKLQMEVQRQLQLRIEAQGKYLKKIIEEQQKLSGVLSGAAPVASSFSAPASGENCPETDKNDPPTPAPTSEFPRQEKASKERAQAKSVSIDDSFSSRHEPLTPDSGCHSSPNESPKPVKKQRQYQDGAFAKSEMILAHQILESSLNSTHKGSRSVFPARETLDPSSGLSIGDDEQFD 317
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4138492 4142462 - Cp4.1LG10g10100.1 Cpe10g00724 476261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe10g00724 317 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 3 314 IPR044848 GO:0003700
Cpe10g00724 317 Gene3D - 48 107 - -
Cpe10g00724 317 Pfam Myb-like DNA-binding domain 52 102 IPR001005 -
Cpe10g00724 317 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7 3 314 - -
Cpe10g00724 317 Pfam MYB-CC type transfactor, LHEQLE motif 135 171 IPR025756 -
Cpe10g00724 317 MobiDBLite consensus disorder prediction 228 258 - -
Cpe10g00724 317 MobiDBLite consensus disorder prediction 183 270 - -
Cpe10g00724 317 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 49 104 IPR006447 GO:0003677
Cpe10g00724 317 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 46 106 IPR017930 -
Cpe10g00724 317 MobiDBLite consensus disorder prediction 284 317 - -
Cpe10g00724 317 SUPERFAMILY Homeodomain-like 48 103 IPR009057 -
Cpe10g00724 317 MobiDBLite consensus disorder prediction 26 46 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe08g01373 Cpe-Chr8:9861359 Cpe10g00724 Cpe-Chr10:4138492 4.88E-58 dispersed
Cpe10g00724 Cpe-Chr10:4138492 Cpe19g00131 Cpe-Chr19:1025411 3.86E-43 dispersed
Cpe10g00724 Cpe-Chr10:4138492 Cpe19g00908 Cpe-Chr19:6599601 4.72E-164 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50143 PF00249 Myb_DNA-binding 1.10E-07 CL0123 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe10g00724 - - cmax:111478721 595.119