Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe10g00724 ATGTTTCAGCAACAGAGTACTCATAATTCAAGCTTTCTTCAAAACAACTCATTAGTTCGTGATCAGAACATACCTTTTGATGCCAGCTCGATGGAACCCACAAATGGAAGCAATGATCCCAGCAACACCCCGAATTTGGCCTCAAAACAGAGATTGCGATGGACACATGATCTTCACGAACGATTCGTTAATGCAGTGGCACAACTTGGTGGTCCAGATCGTGCTACACCCAAAGGCGTCCTTCGAGTGATGGGTGTTCAAGGTCTAACGATATACCACGTTAAAAGCCACCTGCAGAAATATCGACTTGCAAAATACCTTCCCGACTCATCGTCTGATGGGAAAAAGGCTGACAAGAAGGATTCTATTGACGTTCTATCGAACATTGAGGGCTCGTCGGGAATGCAAATTACCGAAGCACTTAAGCTGCAGATGGAGGTACAGAGACAGCTACAGTTACGGATTGAAGCCCAAGGCAAGTACTTAAAGAAGATAATTGAAGAGCAACAAAAACTTAGTGGGGTTCTTTCAGGAGCAGCTCCAGTTGCCTCTTCCTTCTCAGCTCCTGCTTCTGGTGAGAACTGCCCAGAAACCGACAAGAACGACCCACCAACACCTGCGCCCACATCGGAGTTTCCTCGACAAGAGAAAGCATCAAAGGAACGTGCCCAAGCCAAGAGTGTCTCTATTGATGATTCTTTCTCATCTCGTCACGAACCATTGACGCCCGATTCTGGTTGTCATAGCTCCCCAAATGAGAGCCCAAAGCCAGTGAAGAAGCAAAGACAGTACCAGGATGGTGCATTTGCCAAATCAGAGATGATACTCGCACATCAGATACTGGAGTCAAGTTTAAACTCCACTCACAAGGGATCACGCTCTGTTTTTCCAGCCAGAGAAACGTTGGATCCTTCATCTGGACTATCTATAGGGGACGATGAGCAGTTTGACTAA 954 46.44 MFQQQSTHNSSFLQNNSLVRDQNIPFDASSMEPTNGSNDPSNTPNLASKQRLRWTHDLHERFVNAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLPDSSSDGKKADKKDSIDVLSNIEGSSGMQITEALKLQMEVQRQLQLRIEAQGKYLKKIIEEQQKLSGVLSGAAPVASSFSAPASGENCPETDKNDPPTPAPTSEFPRQEKASKERAQAKSVSIDDSFSSRHEPLTPDSGCHSSPNESPKPVKKQRQYQDGAFAKSEMILAHQILESSLNSTHKGSRSVFPARETLDPSSGLSIGDDEQFD 317
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4138492 4142462 - Cp4.1LG10g10100.1 Cpe10g00724 476261

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe10g00724 317 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 3 314 IPR044848 GO:0003700
Cpe10g00724 317 Gene3D - 48 107 - -
Cpe10g00724 317 Pfam Myb-like DNA-binding domain 52 102 IPR001005 -
Cpe10g00724 317 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7 3 314 - -
Cpe10g00724 317 Pfam MYB-CC type transfactor, LHEQLE motif 135 171 IPR025756 -
Cpe10g00724 317 MobiDBLite consensus disorder prediction 228 258 - -
Cpe10g00724 317 MobiDBLite consensus disorder prediction 183 270 - -
Cpe10g00724 317 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 49 104 IPR006447 GO:0003677
Cpe10g00724 317 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 46 106 IPR017930 -
Cpe10g00724 317 MobiDBLite consensus disorder prediction 284 317 - -
Cpe10g00724 317 SUPERFAMILY Homeodomain-like 48 103 IPR009057 -
Cpe10g00724 317 MobiDBLite consensus disorder prediction 26 46 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe10g00724 - - - cmax:111478721 595.119
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe08g01373 Cpe-Chr8:9861359 Cpe10g00724 Cpe-Chr10:4138492 4.88E-58 dispersed
Cpe10g00724 Cpe-Chr10:4138492 Cpe19g00131 Cpe-Chr19:1025411 3.86E-43 dispersed
Cpe10g00724 Cpe-Chr10:4138492 Cpe19g00908 Cpe-Chr19:6599601 4.72E-164 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe03g01593 CST 12 269 G2-like Transcription Factor Family AT3G24120 61.7 5.3e-77 285.0
Cpe08g00397 CST 12 335 G2-like Transcription Factor Family AT3G24120 53.2 4.5e-76 282.0
Cpe15g00910 CST 18 162 G2-like Transcription Factor Family AT3G24120 58.5 1.5e-39 160.6
Cpe15g00178 . 4 152 G2-like Transcription Factor Family AT3G24120 52.5 2.4e-37 153.3
Cpe19g00909 . 31 149 G2-like Transcription Factor Family AT3G24120 68.0 2.4e-37 153.3
Cpe15g00191 . 154 356 G2-like Transcription Factor Family AT5G16560 52.2 2.6e-42 170.2
Cpe05g00160 . 168 353 G2-like Transcription Factor Family AT5G16560 53.8 2.9e-41 166.8
Cpe07g00452 CCT,CST 13 152 G2-like Transcription Factor Family AT5G42630 58.3 3.1e-37 152.5
Cpe13g00409 CCT 20 255 G2-like Transcription Factor Family AT1G25550 50.6 3.6e-51 199.1
Cpe01g01799 . 24 261 G2-like Transcription Factor Family AT1G25550 52.2 2.5e-44 176.4
Cpe01g01799 . 24 261 G2-like Transcription Factor Family AT3G25790 51.8 1.0e-36 151.0
Cpe10g01100 . 1 303 G2-like Transcription Factor Family AT5G05090 54.4 2.2e-74 276.2
Cpe19g00248 . 1 299 G2-like Transcription Factor Family AT5G05090 53.9 2.3e-71 266.2
Cpe08g01347 . 1 288 G2-like Transcription Factor Family AT5G05090 52.3 9.6e-70 260.8
Cpe03g00415 . 1 265 G2-like Transcription Factor Family AT5G05090 57.9 4.5e-67 251.9
Cpe03g01593 CST 12 313 G2-like Transcription Factor Family AT4G13640 56.5 9.0e-61 231.1
Cpe03g01593 CST 12 269 G2-like Transcription Factor Family AT3G24120 61.7 5.3e-77 285.0
Cpe08g00397 CST 12 335 G2-like Transcription Factor Family AT3G24120 53.2 4.5e-76 282.0
Cpe15g00910 CST 18 162 G2-like Transcription Factor Family AT3G24120 58.5 1.5e-39 160.6
Cpe15g00178 . 4 152 G2-like Transcription Factor Family AT3G24120 52.5 2.4e-37 153.3
Cpe19g00909 . 31 149 G2-like Transcription Factor Family AT3G24120 68.0 2.4e-37 153.3
Cpe11g00707 . 7 200 G2-like Transcription Factor Family AT1G69580 50.5 4.7e-37 152.5
Cpe05g01028 CST 1 160 G2-like Transcription Factor Family AT1G79430 75.3 3.9e-58 222.6
Cpe08g00397 CST 26 196 G2-like Transcription Factor Family AT1G79430 56.5 1.5e-38 157.5
Cpe03g01593 CST 41 205 G2-like Transcription Factor Family AT1G79430 59.4 6.5e-37 152.1
Cpe10g00724 . 84 317 G2-like Transcription Factor Family AT2G01060 51.6 6.2e-52 201.4
Cpe10g01100 . 1 303 G2-like Transcription Factor Family AT3G10760 60.7 4.4e-88 322.0
Cpe19g00248 . 1 299 G2-like Transcription Factor Family AT3G10760 61.9 4.4e-88 322.0
Cpe08g01347 . 1 288 G2-like Transcription Factor Family AT3G10760 59.5 6.0e-85 311.6
Cpe03g00415 . 1 278 G2-like Transcription Factor Family AT3G10760 56.7 8.6e-76 281.2
Cpe08g01347 . 1 287 G2-like Transcription Factor Family AT2G40970 50.5 3.4e-61 232.3
Cpe19g00248 . 1 204 G2-like Transcription Factor Family AT2G40970 61.6 5.5e-59 224.9
Cpe03g00415 . 1 195 G2-like Transcription Factor Family AT2G40970 59.4 9.3e-59 224.2
Cpe10g01100 . 1 203 G2-like Transcription Factor Family AT2G40970 58.8 1.2e-58 223.8
Cpe05g00834 . 108 367 G2-like Transcription Factor Family AT4G28610 50.2 6.2e-52 202.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008809 1 2 1 0 1 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 0 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50143 PF00249 Myb_DNA-binding 1.10E-07 CL0123 Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe10g00724 Cpe_Chr10 FPKM 3.237589 3.310584 2.068089 3.748322 1.822118 1.254789 2.162376 4.973135 5.447281 5.778583