Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe10g00775 ATGGCTTCCCCATTGTTATCCCTCTTCTTCCTCGCCACAATTATCCGCCTCCCTTCACCGTCCACGGCCTACTCCAACAGCTACACCAAACTAGCCCTCAATCCCATTGACGCATGCTGGAGGACCAACCCCAACTGGGCGGCCAACCGCCGCGCCCTGGCAGACTGCGCCGTCGGGTTTGGCAGTGACGCATTGGGAGGCAAATTCGGGTCAATCTACGTGGTCATAGACCCGTCGGACGACCCGGAATACCCGAAGCCCGGAACGCTGCGTTTTGGGGTGATCCAAGAGGAGCCATTATGGATTGTATTCGCAAGAGATATGGTGATTACTCTGGAAAGAGAGCTGATGGTGAACAGCTTCAAGACCATTGACGGGCGAGGGGCTAAAGTGGAAATTGGCAATGGGCCATGCATTACCATCCAAAACGTGAGCCATGTCATAATCCACGGCATCACCATCCGTGACTGTAAGCCGGCCAAGCCTGGGCGCGTGAGAAGCTCACTCACCCATTGTGGAGACCGCCAACAGTCCGATGGTGACGCCATTTCTGTATTCAGTTCTTCCCATATTTGGATCGACCATTGCTCCTTGGCTAGCTGCACTGACGGCCTCATTGACGTCATCCACGCTTCCACTGCCGTCACCATCTCTAATAATTACTTCTCTCAACATGATAAATGGGAAATGTACGCTGTGGGTGGCAGTGCAGATCCAAAAATCTTCAGCCAAGGAAACTACTTTGATGCTCCTGATGATTCATCCTCAAAGCAGGTTACAAAGAGAGAGGTTTATGTGAATGGATGGAAGAAGTGGAAATGGAGGTCTTCAAATGATGTGTTTGTGAATGGGGCTTATTTCATCCCATCTGGGTGGGGGTCTTGTACGCCTATCTACACTCGAGATCAAGCTTTTCCTGTGGCTCATGGCTCTTTGGCTCCTCTTTTGACTGATACCGCTGGCGCTTTGTGTTGTGTTGTTGGTAAAGCTTGTTGA 996 51.31 MASPLLSLFFLATIIRLPSPSTAYSNSYTKLALNPIDACWRTNPNWAANRRALADCAVGFGSDALGGKFGSIYVVIDPSDDPEYPKPGTLRFGVIQEEPLWIVFARDMVITLERELMVNSFKTIDGRGAKVEIGNGPCITIQNVSHVIIHGITIRDCKPAKPGRVRSSLTHCGDRQQSDGDAISVFSSSHIWIDHCSLASCTDGLIDVIHASTAVTISNNYFSQHDKWEMYAVGGSADPKIFSQGNYFDAPDDSSSKQVTKREVYVNGWKKWKWRSSNDVFVNGAYFIPSGWGSCTPIYTRDQAFPVAHGSLAPLLTDTAGALCCVVGKAC 331
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4407397 4408883 + Cp4.1LG10g09820.1 Cpe10g00775 476312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe10g00775 331 Gene3D - 33 227 IPR012334 -
Cpe10g00775 331 Gene3D - 228 324 IPR012334 -
Cpe10g00775 331 Pfam Pectate lyase 116 230 IPR002022 -
Cpe10g00775 331 SMART amb_all 107 254 IPR002022 -
Cpe10g00775 331 PANTHER PECTATE LYASE 16-RELATED 226 329 - -
Cpe10g00775 331 PANTHER PECTATE LYASE 16-RELATED 21 227 - -
Cpe10g00775 331 PANTHER PECTATE LYASE 18-RELATED 226 329 IPR045032 GO:0030570
Cpe10g00775 331 PANTHER PECTATE LYASE 18-RELATED 21 227 IPR045032 GO:0030570
Cpe10g00775 331 SUPERFAMILY Pectin lyase-like 34 322 IPR011050 -
Cpe10g00775 331 PRINTS Pollen allergen Amb family signature 79 104 IPR018082 -
Cpe10g00775 331 PRINTS Pollen allergen Amb family signature 115 131 IPR018082 -
Cpe10g00775 331 PRINTS Pollen allergen Amb family signature 56 73 IPR018082 -
Cpe10g00775 331 PRINTS Pollen allergen Amb family signature 179 200 IPR018082 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe10g00775 Cpe20g00339 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe10g00775 Cpe-Chr10:4407397 Cpe20g00339 Cpe-Chr20:1918062 9.10E-112 dispersed
Cpe10g00775 Cpe-Chr10:4407397 Cpe20g00347 Cpe-Chr20:1966050 3.81E-144 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe10g00775 K01728 - csv:101210816 554.288