Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe10g00784 ATGTGGCTCCAAACCGAAGATATAGATGTTCCTCTTACAAACGTCCGACCGGTTAAGAAGGTTGCTTTGATTGTTGTAACAGGGGATCGTGGCCTCTGCGGAAGTTTCAATAACATGATCATCAAAAAGGCAGAATCCAGAATCGCAGAATTGAAGACCCTTGGCGTTGATTATACAGTTATTAGCGTTGGCAAGAAGGGAAATTCGTATTTCCTTCGCCGGCCTTACATCCCAGTAGATAGATTTCTTGAGGGCGGTTCACTTTCCACAGCTAAAGAAGCTCAAGCCATTGCAGACGATGTTTTTTCCCTCTTTGTTAGCGAAGAGGTCGACAAAGTCGAGCTTCTGTACACCAAATTCGTGTCATTAGTTAAATCGGACCCTGTGATCCACACACTGCTTCCATTGTCCCCGAAAGGAGAGATTTGTGATATAAATGGTGTTTGTGTCGATGCCGCAGAGGACGAGTTCTTCAGATTGACGACAAAAGAAGGAAAATTAACCATAGAGAGAGATGCCGTGAGAACAAAAACCTCAGATTTTTCCCCAATTTTGCAGTTTGAGCAGGACCCAGTTCAGATTCTTGATGCTTTATTACCTCTCTATTTGAACAGTCAAATTTTGAGGTCATTGCAAGAATCATTAGCCAGTGAACTTGCGGCCAGAATGAGTGCCATGAGCAGTGCTACTGATAATGCAAGCGAGTTGAAGAAGACGCTCTCTATTGTCTACAACAGACAGCGTCAAGCCAAAATCACTGGCGAGATTTTGGAGATTGTTGCTGCTCTAAAGATTCATGTTGTCTCACAGAATGTCGACATCCCATGTCAAGCCAAGGAAAGAAATAAAAATCTGATAAATATCCGTGTGAAAGCCCAGTTTCTTTCCAAGAGTGATCAGGCCAGGCAGTCTCTGTTCCTTTTTGTTCCCGAGGAGATTACCCAGTTCAGTTCCATCGCATTCTCACTTTCTTCAGCACCAAAAATGAAACAAAATATATCAACCAGTATGGCAGGTTCCAACACCAGATGGAGCCATGGGTTTCATGGAAAATCAATCAAAGACGAAGACTTTGATGAAGAACAAGCGTGGGGCTTTCCCAGCGAAACCAAAAAAGAAGAAGCTTCGAGCCCCGTGGCAACAAAATTCAAGCACTTCAATTCATCAGCCTCTTCTTCTTCTTCTTCGTCTTCCTCTGCTTGGTGCATGCAGATCAGCTCTGCTCCAAAAATGATCCCAAAAGCCAAAACCACACCCAATCAAGAACCCAAAACTGTGAAGAGATCCTCAGCTCCTTTGGAGATACCAGACTGGTCCAAGATATATGGAAGAAATGGCAACATGGGTAGTCATTGGATGGGCGAGGAATACGGCTTTATTAACGATGATGAGGAGGAAGAGGAGGAGGAGGATGTTATGGTTCCTCCACATGAATGGATTGCTAGGAAGCTTGCAAGGACCCAGATTTCATCCTTCTCAGTTTGTGAAGGCATTGGAAGAACATTGAAGGGAAGAGATCTAAGTAAAGTGAGGAATGCCATATTGACCAAAACTGGGTTTTTGGAGTGA 1569 43.79 MWLQTEDIDVPLTNVRPVKKVALIVVTGDRGLCGSFNNMIIKKAESRIAELKTLGVDYTVISVGKKGNSYFLRRPYIPVDRFLEGGSLSTAKEAQAIADDVFSLFVSEEVDKVELLYTKFVSLVKSDPVIHTLLPLSPKGEICDINGVCVDAAEDEFFRLTTKEGKLTIERDAVRTKTSDFSPILQFEQDPVQILDALLPLYLNSQILRSLQESLASELAARMSAMSSATDNASELKKTLSIVYNRQRQAKITGEILEIVAALKIHVVSQNVDIPCQAKERNKNLINIRVKAQFLSKSDQARQSLFLFVPEEITQFSSIAFSLSSAPKMKQNISTSMAGSNTRWSHGFHGKSIKDEDFDEEQAWGFPSETKKEEASSPVATKFKHFNSSASSSSSSSSSAWCMQISSAPKMIPKAKTTPNQEPKTVKRSSAPLEIPDWSKIYGRNGNMGSHWMGEEYGFINDDEEEEEEEDVMVPPHEWIARKLARTQISSFSVCEGIGRTLKGRDLSKVRNAILTKTGFLE 522
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4454695 4459494 - Cp4.1LG10g09610.1 Cpe10g00784 476321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe10g00784 522 SUPERFAMILY ATP synthase (F1-ATPase), gamma subunit 10 262 IPR035968 GO:0015986|GO:0045261|GO:0046933
Cpe10g00784 522 PANTHER ATP SYNTHASE GAMMA CHAIN 1, CHLOROPLASTIC 3 262 - -
Cpe10g00784 522 Gene3D ATP synthase, gamma subunit, helix hairpin domain 166 264 - -
Cpe10g00784 522 PRINTS ATP synthase gamma subunit signature 18 37 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cpe10g00784 522 PRINTS ATP synthase gamma subunit signature 213 232 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cpe10g00784 522 PRINTS ATP synthase gamma subunit signature 111 128 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cpe10g00784 522 PRINTS ATP synthase gamma subunit signature 244 265 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cpe10g00784 522 TIGRFAM ATPsyn_F1gamma: ATP synthase F1, gamma subunit 7 261 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cpe10g00784 522 Pfam ATP synthase 10 262 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cpe10g00784 522 Pfam Senescence regulator 356 522 IPR007608 -
Cpe10g00784 522 PANTHER ATP SYNTHASE GAMMA CHAIN 3 262 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cpe10g00784 522 Gene3D - 10 137 - -
Cpe10g00784 522 CDD F1-ATPase_gamma 4 261 IPR000131 GO:0015986|GO:0045261|GO:0046933
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe10g00784 Cpe20g00363 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe10g00784 Cpe-Chr10:4454695 Cpe16g00535 Cpe-Chr16:6265107 2.59E-17 dispersed
Cpe20g00071 Cpe-Chr20:383670 Cpe10g00784 Cpe-Chr10:4454695 2.45E-13 transposed
Cpe20g00363 Cpe-Chr20:2046430 Cpe10g00784 Cpe-Chr10:4454695 5.79E-174 transposed
Cpe10g00784 Cpe-Chr10:4454695 Cpe02g00776 Cpe-Chr2:4942962 3.98E-21 wgd
Cpe10g00784 Cpe-Chr10:4454695 Cpe20g00361 Cpe-Chr20:2028983 1.19E-43 wgd
Cpe10g00784 Cpe-Chr10:4454695 Cpe06g00772 Cpe-Chr6:4874721 2.92E-28 wgd
Cpe10g00784 Cpe-Chr10:4454695 Cpe09g00907 Cpe-Chr9:8228398 5.87E-18 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe10g00784 K02115 - csv:101218747 482.641