Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe10g00809 ATGGCGGCTCCATATCCAGATGATTTCAAGTGCCCTATTTCTCTGGAGATAATGTCCGACCCTGTAATACTCTCCTCCGGCCACACCTTTGATCGTTCCTCAATCCAAAGGTGGCTCGATGCCGGTCACCGGACTTGCCCAATCACCCAATTGCCCCTTCCTCAAAACCCTAACCTAATCCCTAACCATGCTCTCAGAAGCTTAATTTCAAATTTCAACCCTGTTTCCCTGTCCAAGCCATTTCTCCCTCATCCCTCGCCCCAAACCCTAATCTCGATTCTCATATCTCCTTCTTCCTCCCTCGATTCCAAGCTTGATTGCCTCAATCAACTCGCGAGGGTTTCGAAGCGCGATTCCGCTATGCGTCGAAGATTGACCGAGTCCGGGGCTGTCTCGGCTGTTCTTAAATGCGTTGGTTCTGACGATCCGAGGCTTCAAGAGAAGGGTCTGTCGCTGTTGCTGAATCTTAGTTTGGACGATGATAACAAAGTGGGTTTGGTTGCAGAAGGGGCTATTGGCCACACTGTGGCTGCTCTTCAAGCGAGGTCCCCTGATTGCAGAGCCGTTGCGGCCACGATGCTGACGAGCTTGGCGGTTGTGGAGGTTAACAAGGCTACAATTGGGGCATATCCTCATGCGGTTCGCTCTCTGGTTTGTCTCTTACGGAACGGCAACTACAGAGAGCAGAAGGAAGCTGCAACTGCGCTTTACGCCATTTGTTCATTCCCCAGGAACCGTCTGCGGGCTGTGGAATGTGGGGTTGTTCCCATTTTGCTCAAAATTGCCAATTCTGGGCTGGATAGAGCAGTGGAGGTTCTGGGGCTTTTGGCCAAGTGCAGGGAAGGTCGCGAAGAGATGCAACGGTTCAAGGGATGTGTGGAGATTTTGGGTTGTGTTTTGAGAAATGGAGCCCCAAGAGGGGTTCAATATGCTCTTCTAACTCTGAGTTCCCTGTGCTGCCACTGCGAGCGACAGTGCGTGGAGGCCAGAAGAGAAGGCGTTTTGGGAATCTGTATGACATTGATTGATGACAATAATGAAAAGATCAGAGCAAATGCTGCAAATTTGATTCATATACTGCGCGGAAACAACACATGA 1098 50.55 MAAPYPDDFKCPISLEIMSDPVILSSGHTFDRSSIQRWLDAGHRTCPITQLPLPQNPNLIPNHALRSLISNFNPVSLSKPFLPHPSPQTLISILISPSSSLDSKLDCLNQLARVSKRDSAMRRRLTESGAVSAVLKCVGSDDPRLQEKGLSLLLNLSLDDDNKVGLVAEGAIGHTVAALQARSPDCRAVAATMLTSLAVVEVNKATIGAYPHAVRSLVCLLRNGNYREQKEAATALYAICSFPRNRLRAVECGVVPILLKIANSGLDRAVEVLGLLAKCREGREEMQRFKGCVEILGCVLRNGAPRGVQYALLTLSSLCCHCERQCVEARREGVLGICMTLIDDNNEKIRANAANLIHILRGNNT 365
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4588548 4589645 - Cp4.1LG10g09310.1 Cpe10g00809 476346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe10g00809 365 SUPERFAMILY ARM repeat 88 360 IPR016024 -
Cpe10g00809 365 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 76 IPR013083 -
Cpe10g00809 365 SMART Ubox_2 8 72 IPR003613 GO:0004842|GO:0016567
Cpe10g00809 365 PANTHER U BOX DOMAIN-CONTAINING 1 361 - -
Cpe10g00809 365 SMART arm_5 203 241 IPR000225 GO:0005515
Cpe10g00809 365 SMART arm_5 118 158 IPR000225 GO:0005515
Cpe10g00809 365 SMART arm_5 322 362 IPR000225 GO:0005515
Cpe10g00809 365 SMART arm_5 159 199 IPR000225 GO:0005515
Cpe10g00809 365 SMART arm_5 279 320 IPR000225 GO:0005515
Cpe10g00809 365 Gene3D - 206 269 IPR011989 -
Cpe10g00809 365 Gene3D - 90 205 IPR011989 -
Cpe10g00809 365 ProSiteProfiles U-box domain profile. 4 79 IPR003613 GO:0004842|GO:0016567
Cpe10g00809 365 SUPERFAMILY RING/U-box 3 72 - -
Cpe10g00809 365 CDD RING-Ubox_PUB 9 50 IPR045210 -
Cpe10g00809 365 Pfam U-box domain 6 72 IPR003613 GO:0004842|GO:0016567
Cpe10g00809 365 Gene3D - 270 365 IPR011989 -
Cpe10g00809 365 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 8 1 361 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe10g00809 Cpe-Chr10:4588548 Cpe02g01239 Cpe-Chr2:11139117 3.60E-59 dispersed
Cpe10g00809 Cpe-Chr10:4588548 Cpe19g00982 Cpe-Chr19:6908528 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe10g00809 - - csv:101213883 605.905