Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe10g00833 ATGGGTTGTTCTCATTGGAATTTGTTCATGAAGATCTTAATTGGGTTGCTCTTGCTCTTCACCAACCCTTTTTGCCTTGGAGATACTGACCTCCGTGATGTTGCTGCAATCAATGCGTTATTTATTGCTCTTGGCTACCCTCCTTTGCGAGGATGGATTCTTGTGGGAGGTGATCCATGTGGGGAGAAGTGGCAAGGGGTTGAGTGTGTGTTCTCGAATATAACAGCGATACAACTCAGTGGTTTGAATTTGGGAGGAGAGCTAGGCACTAGCTTAGACCAATTTGAGTCAATAATATCAATAGATCTTAGCAATAACCATATTGGAGGGATTATTCCATCTGCATTGCCTGCTACACTAAGAAGTTTGTCAATAAACAACAACCTTCTTACCGGGGCAATCCCTGATGTCTTCCAGCTGCTTAATGGCTTGAACAACTTGGACTTGTCGGGCAACAACTTGAGCGGTCAGCTGCCTCCCTCCATGGCGGATTTGTTCTCCCTTACTACATTGCACTTGCAGAACAATCGACTTTCTGGGATGCTCGATGTTCTACAGGATCTTCCGTTGTCGGATTTAAAAGATGGAAACCCTTTTAATACTACCATAATTCCATCTGCACCTGCTTTAGCCCCTTCACCATTTGCTGTGGCGCCTGTTACTGCGGGACGACCAACCAGACAGACGGGTGCGGGTCAGCCATTGTCATCAGGGAGTCCTGAATCCGATGGAGGAAGGAGTTTTTTCTCTGGTAAGCGGATCATTGGGATTGTTATTATTGGAGCAGTAATATTAGTGGCATTGGGAGCTTGTATTCTCTTATCGGTATGCTTGAAAAGAAGAAGCAAGCATCGAGAAGAGACGAAGATGGTTCGTGAAAATGTTGATATGGGTTCTAAAGATAAGCCGAAACTCACGAAGCCCTCGGTTGACGTTGACGACGTGGAGAAAGGTCGAAGGGAGACCACTCTTAAGCCAGTTGATAGAGACGGGATGAAGGATAGAATAATGGATTATACCTCCCCAAAGCTACACGAAAACCCATTTGCCTCCAATACGAGCTTTCGTGAAGACCATACGGAGAGTTTTCGTGATAGACGTGACGCAAATGGGAAGAGAAAAGATGCCTCCAATATGAGTTTCCGTGACGACTATACGGAGAGTTCGAGCATAAACATAGATGAGTTGCTTGCACGACCTCCTCCTCCCCCTCCATTTTCGCTCCTTTCAACTCAGGAGATTGCAAAACCAATTGTGACAGCCGACGTACCTAGTCGAGTACCTAAAAAACTAAACACGAGTTCTTTAAGAGTTTTCACGATCGCGTCGCTTCAGCAGTATACTAATAGTTTCTCTGAAGATAATCTTCTTGGGAAAGGCATGCTTGGTAGTGTCTATAGAGCTGAACTACCAAATGGAAGGCTTTTGGCCGTTAAAAAACTGGATGGATCCTCGTTGACTCGTTGGAGCGACGATGAATTTCACAACCTCGTGTCTGATATATGCGAACTTCGGCACGATAACATTGTGGAGCTTAAGGGCTATTGTGCTGAGCATGGACAATATCTACTCATTTACGAGTATTGCGAAAATGGCACACTCTATGAAGCACTCCACGTCGACAAGGAGATGCATCAAAAGCTTTCGTGGAACGTGCGCGTGAGGATTGCACTTGGAGCTGCACGTGCCCTCGAGTATCTACATGAGGCCTGTCAGCCGCCAATTGTGCACCAAAATTTTAAGTCTGCTAACATTCTCCTGGACAATGAGCTAAAAGCACAGCTCTCTGACTCTGGCCTTGCTACACTGCTTGATAATCAGAACACTGCCTCGAGGAGAGCAATATCTTGTTCGATGGGCTATTCCAAGGCTACATGA 1878 45.69 MGCSHWNLFMKILIGLLLLFTNPFCLGDTDLRDVAAINALFIALGYPPLRGWILVGGDPCGEKWQGVECVFSNITAIQLSGLNLGGELGTSLDQFESIISIDLSNNHIGGIIPSALPATLRSLSINNNLLTGAIPDVFQLLNGLNNLDLSGNNLSGQLPPSMADLFSLTTLHLQNNRLSGMLDVLQDLPLSDLKDGNPFNTTIIPSAPALAPSPFAVAPVTAGRPTRQTGAGQPLSSGSPESDGGRSFFSGKRIIGIVIIGAVILVALGACILLSVCLKRRSKHREETKMVRENVDMGSKDKPKLTKPSVDVDDVEKGRRETTLKPVDRDGMKDRIMDYTSPKLHENPFASNTSFREDHTESFRDRRDANGKRKDASNMSFRDDYTESSSINIDELLARPPPPPPFSLLSTQEIAKPIVTADVPSRVPKKLNTSSLRVFTIASLQQYTNSFSEDNLLGKGMLGSVYRAELPNGRLLAVKKLDGSSLTRWSDDEFHNLVSDICELRHDNIVELKGYCAEHGQYLLIYEYCENGTLYEALHVDKEMHQKLSWNVRVRIALGAARALEYLHEACQPPIVHQNFKSANILLDNELKAQLSDSGLATLLDNQNTASRRAISCSMGYSKAT 625
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4709935 4715179 - Cp4.1LG10g09190.1 Cpe10g00833 476370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe10g00833 625 SMART serkin_6 451 625 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe10g00833 625 Pfam Protein kinase domain 452 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe10g00833 625 MobiDBLite consensus disorder prediction 340 385 - -
Cpe10g00833 625 Gene3D Ribonuclease Inhibitor 44 206 IPR032675 -
Cpe10g00833 625 Gene3D Transferase(Phosphotransferase) domain 1 529 623 - -
Cpe10g00833 625 ProSiteProfiles Protein kinase domain profile. 451 625 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe10g00833 625 PANTHER LEUCINE RICH REPEAT KINASE 2 9 135 - -
Cpe10g00833 625 Pfam Leucine rich repeat 119 178 IPR001611 GO:0005515
Cpe10g00833 625 MobiDBLite consensus disorder prediction 357 381 - -
Cpe10g00833 625 SUPERFAMILY L domain-like 41 189 - -
Cpe10g00833 625 PANTHER LEUCINE RICH REPEAT KINASE 2 194 610 - -
Cpe10g00833 625 PANTHER LEUCINE RICH REPEAT KINASE 2 120 193 - -
Cpe10g00833 625 MobiDBLite consensus disorder prediction 294 323 - -
Cpe10g00833 625 Gene3D Phosphorylase Kinase; domain 1 419 528 - -
Cpe10g00833 625 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 3-LIKE ISOFORM X1 120 193 - -
Cpe10g00833 625 MobiDBLite consensus disorder prediction 226 244 - -
Cpe10g00833 625 MobiDBLite consensus disorder prediction 220 244 - -
Cpe10g00833 625 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 3-LIKE ISOFORM X1 194 610 - -
Cpe10g00833 625 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 3-LIKE ISOFORM X1 9 135 - -
Cpe10g00833 625 SUPERFAMILY Protein kinase-like (PK-like) 428 612 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe10g00833 Cpe-Chr10:4709935 Cpe03g01037 Cpe-Chr3:8458185 4.45E-101 dispersed
Cpe10g00833 Cpe-Chr10:4709935 Cpe15g00790 Cpe-Chr15:7981963 1.51E-127 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62670 PF00069 Pkinase 6.80E-25 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe10g00833 - - cmo:103484543 877.856