Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe10g00861 ATGGAATCCTTACCCTACGCCCACGTTGATTCGAGCCTTCGAGCCCTCGCCGGTCAGGCCGAGGGCTTTGGCCGTTCTGCCATTGGTGGTCTTTATGGCTCTGTTTATTGTGTCACTAATTTAGCAGATGATGGTCCGGGATCGCTTAGGTCCGGGTGTCGTATGAAAGAGCCCCTTTGGATTATCTTTGAAGTTTCAGGCACAATTCACTTGTCGACATTTCTTAGTGTGTCATCGTATAAAACTGTAGATGGTCGTGGACAAAGGATAAAATTCACAGGAAAGGGATTGAGACTGAAAGAATGTGAGCATGTGATCATTTGCAATTTGGAGTTTGAAGGTGGTAGAGGTCATGATGTTGATGGAGTTCAAATCAAACCCAATTCAAAGCACATATGGATAGACCGTTGCAGCCTCCGAGACTATGATGATGGGTTGATTGATATCACCAGAGGAAGCACAGATATCACTATTTCTAGGTGTCACTTCTCACAGCATGACAAGACGATGCTCATCGGAGCTGATCCATCCCACGTCGGCGATCGATGCATTCGTGTCACTATTCACCACTGTTTTTTCGATGGTACTCGGCAACGGCATCCTCGTGTTAGATTTGCTCAAGTGCATCTATACAATAATTACACCAGAAACTGGGGGATCTATGCTGTCTGTGCTAGTGTAGAATCACAGATATACTCTCAGTGCAACATATACGAAGCAGGAGAGAAAAAGGTGGCATTTCGATATCTAACTGAAAAGGCAGCAGACAAGGAAGAGCCATCAAGTGGGTGCATATGGTCCGACGGAGACTTGTTTGTAAATGGCACACAAAGCGGGCTGTCGGCGCCAACCGCCGGACCCAGCTCCTTTCATCCCTCACAACATTACACTGCCTGGACAGTGGAACCTCCAACGGATGCTCTGAAACAGATCCTCCAACTTTGTACTGGACGCCAAAACATCCAAAGCCCCACTGATCTGCCTCTTCTACCTTAG 996 47.09 MESLPYAHVDSSLRALAGQAEGFGRSAIGGLYGSVYCVTNLADDGPGSLRSGCRMKEPLWIIFEVSGTIHLSTFLSVSSYKTVDGRGQRIKFTGKGLRLKECEHVIICNLEFEGGRGHDVDGVQIKPNSKHIWIDRCSLRDYDDGLIDITRGSTDITISRCHFSQHDKTMLIGADPSHVGDRCIRVTIHHCFFDGTRQRHPRVRFAQVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEAGEKKVAFRYLTEKAADKEEPSSGCIWSDGDLFVNGTQSGLSAPTAGPSSFHPSQHYTAWTVEPPTDALKQILQLCTGRQNIQSPTDLPLLP 331
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4867563 4871563 + Cp4.1LG10g08870.1 Cpe10g00861 476398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe10g00861 331 PANTHER PECTATE LYASE 18-RELATED 1 324 IPR045032 GO:0030570
Cpe10g00861 331 PANTHER PECTATE LYASE 1 324 - -
Cpe10g00861 331 Pfam Pectate lyase 75 237 IPR002022 -
Cpe10g00861 331 Gene3D - 6 311 IPR012334 -
Cpe10g00861 331 SUPERFAMILY Pectin lyase-like 17 312 IPR011050 -
Cpe10g00861 331 PRINTS Pollen allergen Amb family signature 19 36 IPR018082 -
Cpe10g00861 331 PRINTS Pollen allergen Amb family signature 74 90 IPR018082 -
Cpe10g00861 331 PRINTS Pollen allergen Amb family signature 221 240 IPR018082 -
Cpe10g00861 331 SMART amb_all 31 244 IPR002022 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe10g00861 Cpe-Chr10:4867563 Cpe13g00765 Cpe-Chr13:6983856 1.69E-46 dispersed
Cpe10g00861 Cpe-Chr10:4867563 Cpe19g00380 Cpe-Chr19:3407174 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe10g00861 K01728 - csv:101219724 613.224