Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe10g00880 ATGAGACATGCCACCAAGGATGCTGGTGTCATTGCTGGTCTCAATGTCATGAGAATTATCAATGAGCCCACGGCCGCTGCCATTGCCTACGGACTTGACAAGAAGGCAACCAGTGTCGGTGAAAAGAATGTTTTGATTTTTGATCTAGGTGGTGGTACTTTTGATGTTTCTCTACTTACAATTGAAGAGGGTATCTTTGAGGTGAAGGCCACTGCTGGAGATACTCACCTTGGAGGTGAGGATTTTGACAACAGATTGGTCAACCACTTTGTCCAGGAGTTCAAGAGGAAGAACAAGAAGGACATCAGTGGCAACCCAAGAGCTCTTAGAAGGCTGAGGACCTCTTGTGAGAGAGCCAAGAGGACTCTCTCATCCACTGCTCAAACCACCATCGAGATTGATTCCTTGTACGAAGGAATCGACTTCTACTCAACAATTACCCGTGCCAGATTTGAAGAATTGAACATGGATCTTTTTAGGAAGTGTATGGAACCCGTTGAGAAGTGTTTGAGGGATGCCAAGATGGACAAGAGCACCGTCCACGATGTTGTTCTTGTTGGAGGTTCTACTAGGATTCCCAAGGTCCAACAGTTGTTGCAGGATTTCTTCAACGGTAAGGAGCTGTGCAAGAGCATTAACCCTGATGAAGCCGTTGCCTACGGTGCTGCAGTCCAAGCTGCCATCTTGAGTGGTGAGGGCAACGAGAAGGTCCAGGATCTTCTTCTCTTGGATGTGACTCCTCTTTCCCTCGGTTTGGAAACCGCCGGAGGTGTCATGACTGTTCTGATTCCAAGGAACACCACAATTCCCACAAAGAAGGAGCAGGTATTCTCTACCTACTCTGACAACCAGCCCGGTGTGTTGATCCAAGTGTACGAAGGTGAAAGAACCAGGACCCGCGACAACAACTTGCTTGGAAAATTCGAGCTCTCCGGAATCCCCCCAGCTCCCAGGGGGGTTCCTCAAATCACAGTGTGCTTTGACATCGATGCCAACGGTATCTTGAACGTCTCTGCCGAAGACAAGACCACCGGCCAGAAGAACAAAATCACGATCACGAACGACAAAGGAAGACTCTCAAAGGAGGAGATCGAGAAGATGGTTCAAGAAGCAGAGAAGTACAAGTCTGAGGATGAGGAGCACAAGAAGAAGGTGGAAGCCAAGAACGCCTTGGAGAACTACGCTTACAACATGAGGAACACAGTGAATGACGAGAAGATCGGTGCCAAGCTTTCCCCGGCCGACAAGAAGAAGATTGAAGACGCCATCGAGCAGGCCATCCAGTGGCTCGATGCCAACCAGCTGGCGGAGGCCGATGAGTTCGAGGACAAGATGAAGGAGTTGGAGAGCATCTGCAACCCAATCATCGCCAAGATGTACCAAGGTGCCGGAGCTGACATGGGCGGTGGTGCTGATGACAGCGTCCCTGCGGGCGGTAGCGGTGCAGGTCCCAAGATCGAGGAAGTCGACTAA 1473 50.17 MRHATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRLVNHFVQEFKRKNKKDISGNPRALRRLRTSCERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKMVQEAEKYKSEDEEHKKKVEAKNALENYAYNMRNTVNDEKIGAKLSPADKKKIEDAIEQAIQWLDANQLAEADEFEDKMKELESICNPIIAKMYQGAGADMGGGADDSVPAGGSGAGPKIEEVD 490
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4955234 4958263 + Cp4.1LG10g08730.1 Cpe10g00880 476417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe10g00880 490 PANTHER HEAT SHOCK PROTEIN 70KDA 2 471 IPR013126 GO:0005524|GO:0140662
Cpe10g00880 490 SUPERFAMILY Actin-like ATPase domain 41 231 IPR043129 -
Cpe10g00880 490 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 386 465 IPR029048 -
Cpe10g00880 490 PANTHER HEAT SHOCK COGNATE 70 KDA PROTEIN 2-LIKE 2 471 - -
Cpe10g00880 490 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 235 392 IPR029047 -
Cpe10g00880 490 MobiDBLite consensus disorder prediction 463 490 - -
Cpe10g00880 490 ProSitePatterns Heat shock hsp70 proteins family signature 2. 46 59 IPR018181 -
Cpe10g00880 490 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 234 387 IPR029047 -
Cpe10g00880 490 SUPERFAMILY Actin-like ATPase domain 2 34 IPR043129 -
Cpe10g00880 490 Gene3D - 35 209 - -
Cpe10g00880 490 Gene3D - 2 227 - -
Cpe10g00880 490 Pfam Hsp70 protein 2 461 IPR013126 GO:0005524|GO:0140662
Cpe10g00880 490 ProSitePatterns Heat shock hsp70 proteins family signature 3. 183 197 IPR018181 -
Cpe10g00880 490 PRINTS 70kDa heat shock protein signature 212 232 - -
Cpe10g00880 490 PRINTS 70kDa heat shock protein signature 320 336 - -
Cpe10g00880 490 PRINTS 70kDa heat shock protein signature 180 196 - -
Cpe10g00880 490 PRINTS 70kDa heat shock protein signature 239 258 - -
Cpe10g00880 490 PRINTS 70kDa heat shock protein signature 52 62 - -
Cpe10g00880 490 Gene3D - 388 462 IPR029048 -
Cpe10g00880 490 Gene3D Actin; Chain A, domain 4 78 161 - -
Cpe10g00880 490 Coils Coil 364 384 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe10g00880 Cpe-Chr10:4955234 Cpe13g00849 Cpe-Chr13:7464166 0 dispersed
Cpe01g02287 Cpe-Chr1:19349625 Cpe10g00880 Cpe-Chr10:4955234 0 wgd
Cpe10g00880 Cpe-Chr10:4955234 Cpe13g00846 Cpe-Chr13:7456870 6.67E-74 wgd
Cpe10g00880 Cpe-Chr10:4955234 Cpe19g00364 Cpe-Chr19:3302661 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe10g00880 K03283 - csv:101215599 932.939