Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe10g00881 ATGGTGTTTCCCTCTCACCCATCTAATTATCTTGATCCAACAACCCATCAATGGCAACATCAAACCCCAACCCATCAATCTGGGACCAGTTTTCAGCTCGTGTCGCCGCCACGGGCGCCGCCACAAGTCCGCCCTGGCTCGATGGTGGATCGTGCCCGAATGGCGAACCTGCCCGTGCCGGAAACAGCCCTGAAATGTCCAAGATGTGAATCAACTAACACAAAGTTTTGTTATTTCAACAACTATAGCCTCTCTCAGCCACGCCACTTTTGCAAGACCTGCCGTCGTTACTGGACCCGTGGTGGCGCCCTTAGAAGTGTCCCGGTCGGCGGCGGCTACCGCCGGAATAATAAAAGAACCAAAAGTACCTCTAAATCTCCGGTTAACTCCCAATGCCAACCGACAACTATTACTGAGATTTCAGGAGGAGAAACAATGAGATTAAATTACGTACAAAATGAAGGAGGTATGGATTCAACTCATCCCCCCATTGGGATAACAAGCTTCTTAGGGTTTGATCAAATTCAATGGCGGCCACAGCTTCAGCTACACCGATCGCAGCCAGCTCGGTTACTCGGAAACGATGGTGGTGGTGGTGGCGACGCATCGTCGAGCTATAGCATTGTCGGGAAGATGGAAGCGACGAAAATGGAGGACGATGGAGAACACCATGTGAATGTGGGAAAGCCATATTGGGATCGCCATTATTGGAATGCTTTTAATCCTTCATCTTCTTCTTCCCATTTATGA 750 49.6 MVFPSHPSNYLDPTTHQWQHQTPTHQSGTSFQLVSPPRAPPQVRPGSMVDRARMANLPVPETALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRSVPVGGGYRRNNKRTKSTSKSPVNSQCQPTTITEISGGETMRLNYVQNEGGMDSTHPPIGITSFLGFDQIQWRPQLQLHRSQPARLLGNDGGGGGDASSSYSIVGKMEATKMEDDGEHHVNVGKPYWDRHYWNAFNPSSSSSHL 249
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4961166 4962328 + Cp4.1LG10g08680.1 Cpe10g00881 476418

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe10g00881 249 MobiDBLite consensus disorder prediction 1 46 - -
Cpe10g00881 249 Pfam Dof domain, zinc finger 63 118 IPR003851 GO:0003677|GO:0006355
Cpe10g00881 249 MobiDBLite consensus disorder prediction 8 36 - -
Cpe10g00881 249 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 15 153 IPR045174 GO:0003700|GO:0006355
Cpe10g00881 249 PANTHER DOF DOMAIN ZINC FINGER PROTEIN 15 153 - -
Cpe10g00881 249 ProSitePatterns Zinc finger Dof-type signature. 66 102 IPR003851 GO:0003677|GO:0006355
Cpe10g00881 249 MobiDBLite consensus disorder prediction 109 135 - -
Cpe10g00881 249 ProSiteProfiles Zinc finger Dof-type profile. 64 118 IPR003851 GO:0003677|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe10g00881 - - - cmos:111453164 501.13
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe03g00124 Cpe10g00881 CCT
Cpe03g00124 Cpe10g00881 ECH
Cpe08g01160 Cpe10g00881 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe10g00881 Cpe-Chr10:4961166 Cpe20g00813 Cpe-Chr20:7378828 9.84E-46 dispersed
Cpe01g02293 Cpe-Chr1:19379956 Cpe10g00881 Cpe-Chr10:4961166 1.17E-41 wgd
Cpe01g00186 Cpe-Chr1:1055284 Cpe10g00881 Cpe-Chr10:4961166 1.48E-41 wgd
Cpe01g01095 Cpe-Chr1:6475077 Cpe10g00881 Cpe-Chr10:4961166 2.97E-45 wgd
Cpe10g00881 Cpe-Chr10:4961166 Cpe13g00850 Cpe-Chr13:7470504 2.39E-44 wgd
Cpe10g00881 Cpe-Chr10:4961166 Cpe16g00602 Cpe-Chr16:6669904 8.35E-44 wgd
Cpe10g00881 Cpe-Chr10:4961166 Cpe19g00362 Cpe-Chr19:3293086 4.42E-71 wgd
Cpe10g00881 Cpe-Chr10:4961166 Cpe02g01240 Cpe-Chr2:11148513 1.60E-46 wgd
Cpe10g00881 Cpe-Chr10:4961166 Cpe03g00124 Cpe-Chr3:627920 2.04E-42 wgd
Cpe10g00881 Cpe-Chr10:4961166 Cpe05g00913 Cpe-Chr5:6006866 1.31E-45 wgd
Cpe10g00881 Cpe-Chr10:4961166 Cpe08g01160 Cpe-Chr8:8615889 3.59E-44 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g716 Blo01g01119 . . . Bpe04g01330 Bpe03g01040 . . Cmo06g00304 Cmo14g00147 Cma03g00431 . Car03g00379 . . Cpe10g00881 Cpe08g01160 . . . . . . . Cla04g00818 Cam04g0898 Cec04g0967 Cco04g1020 Clacu04g0873 Cmu04g0866 Cre01g0476 Cone3ag0333 Cone10ag0305 Cone13ag1337 Cone19ag1320 Lsi01g01417 Csa04g01478 . Cme04g02612 Blo07g01180 . . Bda05g00969 . Bpe02g00845 Bma01g01875 . Sed02g0688 Cmo03g00443 . Cma06g00304 Cma14g00157 Car06g00263 Car14g00128 Cpe03g00124 . Bhi11g02243 Tan08g1993 Cmetu08g1957 . . . . Cla10g02000 Cam10g2068 Cec10g2109 Cco10g2091 Clacu10g2073 Cmu10g2821 Cre10g2214 Lsi03g02101 Csa03g03190 Chy04g02140 Cme08g02396
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe20g00461 CCT,CST 16 169 C2C2-Dof Transcription Factor Family AT1G29160 57.2 3.2e-45 178.7
Cpe19g01067 CCT,CST 11 160 C2C2-Dof Transcription Factor Family AT1G29160 53.3 2.6e-39 159.1
Cpe10g00145 CCT,CST 21 158 C2C2-Dof Transcription Factor Family AT1G29160 54.9 1.1e-37 153.7
Cpe20g00461 CCT,CST 16 169 C2C2-Dof Transcription Factor Family AT2G34140 56.2 1.8e-45 179.5
Cpe19g01067 CCT,CST 11 160 C2C2-Dof Transcription Factor Family AT2G34140 50.9 8.1e-38 154.1
Cpe01g02293 . 1 138 C2C2-Dof Transcription Factor Family AT2G37590 67.4 8.9e-41 164.9
Cpe08g01160 CCT,CST,ECH 1 126 C2C2-Dof Transcription Factor Family AT2G37590 68.8 3.2e-38 156.4
Cpe02g01240 . 57 131 C2C2-Dof Transcription Factor Family AT2G37590 89.3 4.6e-37 152.5
Cpe13g00850 . 1 125 C2C2-Dof Transcription Factor Family AT2G37590 59.6 1.7e-36 150.6
Cpe20g00813 CST 30 104 C2C2-Dof Transcription Factor Family AT2G37590 89.3 1.7e-36 150.6
Cpe04g01497 CCT,CST,ECH 143 489 C2C2-Dof Transcription Factor Family AT3G47500 52.4 1.2e-83 307.8
Cpe08g01160 CCT,CST,ECH 1 126 C2C2-Dof Transcription Factor Family AT5G02460 66.7 5.9e-39 159.1
Cpe20g00813 CST 23 104 C2C2-Dof Transcription Factor Family AT5G02460 86.6 3.8e-38 156.4
Cpe02g01240 . 1 131 C2C2-Dof Transcription Factor Family AT5G02460 61.2 8.5e-38 155.2
Cpe10g00881 CCT,CST,ECH 43 116 C2C2-Dof Transcription Factor Family AT5G02460 86.5 2.1e-36 150.6
Cpe01g02293 . 1 138 C2C2-Dof Transcription Factor Family AT5G02460 63.9 2.7e-36 150.2
Cpe13g00850 . 1 125 C2C2-Dof Transcription Factor Family AT5G02460 59.9 2.7e-36 150.2
Cpe10g00881 CCT,CST,ECH 19 128 C2C2-Dof Transcription Factor Family AT3G55370 65.5 1.1e-36 151.4
Cpe04g01443 CCT,CST 26 313 C2C2-Dof Transcription Factor Family AT5G60850 52.3 1.4e-48 190.7
Cpe18g00719 CCT 26 318 C2C2-Dof Transcription Factor Family AT5G60850 53.7 2.0e-47 186.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012147 0 0 1 0 0 1 2 1 1 0 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 3 2 0 30
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50154 PF02701 zf-Dof 3.20E-31 No_clan Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe10g00881 Cpe_Chr10 FPKM 0.050106 0.289115 0.0 0.065492 0.0 0.0 0.0 0.0 0.0 0.0