Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe10g00881 ATGGTGTTTCCCTCTCACCCATCTAATTATCTTGATCCAACAACCCATCAATGGCAACATCAAACCCCAACCCATCAATCTGGGACCAGTTTTCAGCTCGTGTCGCCGCCACGGGCGCCGCCACAAGTCCGCCCTGGCTCGATGGTGGATCGTGCCCGAATGGCGAACCTGCCCGTGCCGGAAACAGCCCTGAAATGTCCAAGATGTGAATCAACTAACACAAAGTTTTGTTATTTCAACAACTATAGCCTCTCTCAGCCACGCCACTTTTGCAAGACCTGCCGTCGTTACTGGACCCGTGGTGGCGCCCTTAGAAGTGTCCCGGTCGGCGGCGGCTACCGCCGGAATAATAAAAGAACCAAAAGTACCTCTAAATCTCCGGTTAACTCCCAATGCCAACCGACAACTATTACTGAGATTTCAGGAGGAGAAACAATGAGATTAAATTACGTACAAAATGAAGGAGGTATGGATTCAACTCATCCCCCCATTGGGATAACAAGCTTCTTAGGGTTTGATCAAATTCAATGGCGGCCACAGCTTCAGCTACACCGATCGCAGCCAGCTCGGTTACTCGGAAACGATGGTGGTGGTGGTGGCGACGCATCGTCGAGCTATAGCATTGTCGGGAAGATGGAAGCGACGAAAATGGAGGACGATGGAGAACACCATGTGAATGTGGGAAAGCCATATTGGGATCGCCATTATTGGAATGCTTTTAATCCTTCATCTTCTTCTTCCCATTTATGA 750 49.6 MVFPSHPSNYLDPTTHQWQHQTPTHQSGTSFQLVSPPRAPPQVRPGSMVDRARMANLPVPETALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRSVPVGGGYRRNNKRTKSTSKSPVNSQCQPTTITEISGGETMRLNYVQNEGGMDSTHPPIGITSFLGFDQIQWRPQLQLHRSQPARLLGNDGGGGGDASSSYSIVGKMEATKMEDDGEHHVNVGKPYWDRHYWNAFNPSSSSSHL 249
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4961166 4962328 + Cp4.1LG10g08680.1 Cpe10g00881 476418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe10g00881 249 MobiDBLite consensus disorder prediction 1 46 - -
Cpe10g00881 249 Pfam Dof domain, zinc finger 63 118 IPR003851 GO:0003677|GO:0006355
Cpe10g00881 249 MobiDBLite consensus disorder prediction 8 36 - -
Cpe10g00881 249 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 15 153 IPR045174 GO:0003700|GO:0006355
Cpe10g00881 249 PANTHER DOF DOMAIN ZINC FINGER PROTEIN 15 153 - -
Cpe10g00881 249 ProSitePatterns Zinc finger Dof-type signature. 66 102 IPR003851 GO:0003677|GO:0006355
Cpe10g00881 249 MobiDBLite consensus disorder prediction 109 135 - -
Cpe10g00881 249 ProSiteProfiles Zinc finger Dof-type profile. 64 118 IPR003851 GO:0003677|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe03g00124 Cpe10g00881 CCT
Cpe03g00124 Cpe10g00881 ECH
Cpe08g01160 Cpe10g00881 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe10g00881 Cpe-Chr10:4961166 Cpe20g00813 Cpe-Chr20:7378828 9.84E-46 dispersed
Cpe01g02293 Cpe-Chr1:19379956 Cpe10g00881 Cpe-Chr10:4961166 1.17E-41 wgd
Cpe01g00186 Cpe-Chr1:1055284 Cpe10g00881 Cpe-Chr10:4961166 1.48E-41 wgd
Cpe01g01095 Cpe-Chr1:6475077 Cpe10g00881 Cpe-Chr10:4961166 2.97E-45 wgd
Cpe10g00881 Cpe-Chr10:4961166 Cpe13g00850 Cpe-Chr13:7470504 2.39E-44 wgd
Cpe10g00881 Cpe-Chr10:4961166 Cpe16g00602 Cpe-Chr16:6669904 8.35E-44 wgd
Cpe10g00881 Cpe-Chr10:4961166 Cpe19g00362 Cpe-Chr19:3293086 4.42E-71 wgd
Cpe10g00881 Cpe-Chr10:4961166 Cpe02g01240 Cpe-Chr2:11148513 1.60E-46 wgd
Cpe10g00881 Cpe-Chr10:4961166 Cpe03g00124 Cpe-Chr3:627920 2.04E-42 wgd
Cpe10g00881 Cpe-Chr10:4961166 Cpe05g00913 Cpe-Chr5:6006866 1.31E-45 wgd
Cpe10g00881 Cpe-Chr10:4961166 Cpe08g01160 Cpe-Chr8:8615889 3.59E-44 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50154 PF02701 zf-Dof 3.20E-31 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe10g00881 - - cmos:111453164 501.13