Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe10g00886 | ATGGCTGAGAACGAGGACATCCAGCCTCTTGTCTGTGATAATGGAACAGGAATGGTTAAGGCTGGGTTTGCTGGGGATGATGCTCCAAGGGCTGTCTTCCCTAGCATTGTTGGTCGCCCTCGCCATACAGGTGTTATGGTTGGAATGGGGCAGAAAGATGCTTATGTTGGGGATGAGGCTCAGTCTAAGCGTGGTATTTTGACTCTCAAATACCCTATTGAGCACGGAATTGTCAGCAACTGGGATGACATGGAGAAGATTTGGCATCACACTTTCTACAATGAACTTCGTGTCGCTCCAGAAGAACATCCAATTCTTCTAACTGAGGCACCACTCAATCCCAAAGCTAACCGTGAGAAGATGACCCAGATTATGTTTGAGACCTTCAATGCACCAGCTATGTACGTAGCCATTCAAGCTGTTCTTTCCCTTTATGCCAGTGGTCGTACAACTGGCATTGTGCTAGATTCTGGAGATGGTGTCAGTCACACAGTCCCCATCTACGAGGGATATGCACTTCCGCATGCTATCCTACGTATTGATCTTGCTGGCCGTGACCTGACTGACGCCCTCATGAAAATTTTGACGGAGCGTGGTTATTCATTCACCACTTCAGCTGAGCGTGAAATTGTGAGGGATATGAAGGAAAAGTTGGCATACATTGCCCTTGACTTTGAGCAAGAATTAGAAACCTCTAAGACGAGCTCTTCAGTTGAGAAGAGTTATGAATTGCCAGATGGTCAGGTGATTACCATCGGCGCTGAGCGTTTCCGATGCCCGGAAGTCCTTTTCCAGCCATCCATGATCGGAATGGAAGCTGCTGGTATTCATGAGACAACATACAATTCCATCATGAAATGTGATGTTGACATCAGGAAAGATTTGTATGGAAACATTGTGCTCAGTGGTGGTTCAACCATGTTCCCTGGAATTGCTGATAGAATGAGCAAGGAGATCACTGCCTTGGCCCCGAGCAGCATGAAGATTAAGGTGGTTGCGCCGCCTGAAAGGAAGTACAGTGTGTGGATTGGAGGTTCCATCTTGGCGTCCTTGAGCACTTTCCAGCAGATGTGGATCGCTAAGGCTGAGTATGATGAGTCTGGCCCCTCAATTGTCCACAGGAAATGCTTCTAA | 1134 | 47.44 | MAENEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRIDLAGRDLTDALMKILTERGYSFTTSAEREIVRDMKEKLAYIALDFEQELETSKTSSSVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF | 377 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 4982089 | 4985932 | + | Cp4.1LG10g08720.1 | Cpe10g00886 | 476423 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe10g00886 | 377 | Gene3D | - | 10 | 371 | - | - | |
Cpe10g00886 | 377 | SMART | actin_3 | 7 | 377 | IPR004000 | - | |
Cpe10g00886 | 377 | ProSitePatterns | Actins signature 2. | 358 | 366 | IPR004001 | - | |
Cpe10g00886 | 377 | ProSitePatterns | Actins and actin-related proteins signature. | 106 | 118 | IPR020902 | - | |
Cpe10g00886 | 377 | Gene3D | Actin; Chain A, domain 4 | 182 | 273 | - | - | |
Cpe10g00886 | 377 | PANTHER | ACTIN | 1 | 376 | IPR004000 | - | |
Cpe10g00886 | 377 | Gene3D | - | 140 | 340 | - | - | |
Cpe10g00886 | 377 | PANTHER | - | 1 | 376 | - | - | |
Cpe10g00886 | 377 | CDD | NBD_sugar-kinase_HSP70_actin | 10 | 183 | - | - | |
Cpe10g00886 | 377 | ProSitePatterns | Actins signature 1. | 55 | 65 | IPR004001 | - | |
Cpe10g00886 | 377 | Pfam | Actin | 5 | 377 | IPR004000 | - | |
Cpe10g00886 | 377 | PRINTS | Actin signature | 28 | 37 | IPR004000 | - | |
Cpe10g00886 | 377 | PRINTS | Actin signature | 51 | 62 | IPR004000 | - | |
Cpe10g00886 | 377 | PRINTS | Actin signature | 63 | 85 | IPR004000 | - | |
Cpe10g00886 | 377 | PRINTS | Actin signature | 117 | 130 | IPR004000 | - | |
Cpe10g00886 | 377 | PRINTS | Actin signature | 142 | 161 | IPR004000 | - | |
Cpe10g00886 | 377 | PRINTS | Actin signature | 238 | 254 | IPR004000 | - | |
Cpe10g00886 | 377 | SUPERFAMILY | Actin-like ATPase domain | 149 | 377 | IPR043129 | - | |
Cpe10g00886 | 377 | SUPERFAMILY | Actin-like ATPase domain | 6 | 155 | IPR043129 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe01g01581 | Cpe-Chr1:9667653 | Cpe10g00886 | Cpe-Chr10:4982089 | 1.00E-70 | dispersed | |
Cpe10g00886 | Cpe-Chr10:4982089 | Cpe11g00097 | Cpe-Chr11:521247 | 0 | dispersed | |
Cpe01g02297 | Cpe-Chr1:19396785 | Cpe10g00886 | Cpe-Chr10:4982089 | 0 | wgd | |
Cpe10g00886 | Cpe-Chr10:4982089 | Cpe13g00859 | Cpe-Chr13:7503106 | 0 | wgd | |
Cpe10g00886 | Cpe-Chr10:4982089 | Cpe16g00608 | Cpe-Chr16:6696018 | 0 | wgd | |
Cpe10g00886 | Cpe-Chr10:4982089 | Cpe19g00354 | Cpe-Chr19:3094670 | 0 | wgd | |
Cpe10g00886 | Cpe-Chr10:4982089 | Cpe05g00918 | Cpe-Chr5:6032163 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe10g00886 | K10355 | - | csv:101214246 | 745.347 |