Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe10g00890 ATGGCTTCTCTTTCCCTCCTCTGCTGCATTTCCATTGCTTCTTTCTCCTCCCTCTTCCTCCTCTCTCACGCTAGAATTCCCGGCGTCTACTCCGCCGGAGCCTGGCAGGACGCCCACGCCACATTCTACGGCGGCAGTGATGCTTCCGGAACCATGGGTGGTTCTTGTGGGTATGGGAATCTCTACAGCCAGGGGTATGGTGTTAACACTGCCGCTCTGAGTACTGCTCTGTACAACAATGGACTCAGCTGTGGTGCTTGCTTTGAGATCAAGTGCGCTAATGACCCCCAATGGTGCCATCCCGGTAGCCCTTCTATATTCATTACGGCTACCAATTTTTGTCCCCCCAATTACGCTCTTCCTAGTGACAATGGCGGCTGGTGTAACCCTCCTCGCACCCATTTCGATCTCGCTATGCCTATGTTCCTTAAAATCGCCGAGTACCGCGCCGGAATCGTTCCCGTCTCTTACCGCCGGTGA 480 54.38 MASLSLLCCISIASFSSLFLLSHARIPGVYSAGAWQDAHATFYGGSDASGTMGGSCGYGNLYSQGYGVNTAALSTALYNNGLSCGACFEIKCANDPQWCHPGSPSIFITATNFCPPNYALPSDNGGWCNPPRTHFDLAMPMFLKIAEYRAGIVPVSYRR 159
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5008797 5009530 - Cp4.1LG10g08650.1 Cpe10g00890 476427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe10g00890 159 SUPERFAMILY Barwin-like endoglucanases 34 159 IPR036908 -
Cpe10g00890 159 Pfam Lytic transglycolase 70 157 IPR009009 -
Cpe10g00890 159 Gene3D - 22 159 IPR036908 -
Cpe10g00890 159 PRINTS Expansin signature 65 79 IPR002963 GO:0009664
Cpe10g00890 159 PRINTS Expansin signature 142 155 IPR002963 GO:0009664
Cpe10g00890 159 PRINTS Expansin signature 106 116 IPR002963 GO:0009664
Cpe10g00890 159 PRINTS Expansin signature 92 103 IPR002963 GO:0009664
Cpe10g00890 159 PRINTS Expansin signature 125 142 IPR002963 GO:0009664
Cpe10g00890 159 PRINTS Expansin/Lol pI family signature 74 92 IPR007118 GO:0005576
Cpe10g00890 159 PRINTS Expansin/Lol pI family signature 34 49 IPR007118 GO:0005576
Cpe10g00890 159 PRINTS Expansin/Lol pI family signature 150 159 IPR007118 GO:0005576
Cpe10g00890 159 PRINTS Expansin/Lol pI family signature 52 70 IPR007118 GO:0005576
Cpe10g00890 159 PANTHER EXPANSIN 7 159 - -
Cpe10g00890 159 PANTHER EXPANSIN-A15 7 159 IPR002963 GO:0009664
Cpe10g00890 159 SMART dpbb_1 70 157 IPR007112 -
Cpe10g00890 159 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 53 159 IPR007112 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe10g00890 Cpe-Chr10:5008797 Cpe20g00823 Cpe-Chr20:7443824 6.91E-94 dispersed
Cpe01g02305 Cpe-Chr1:19451816 Cpe10g00890 Cpe-Chr10:5008797 1.04E-86 wgd
Cpe01g00178 Cpe-Chr1:1002796 Cpe10g00890 Cpe-Chr10:5008797 4.81E-95 wgd
Cpe01g01088 Cpe-Chr1:6418949 Cpe10g00890 Cpe-Chr10:5008797 1.86E-69 wgd
Cpe10g00890 Cpe-Chr10:5008797 Cpe16g00619 Cpe-Chr16:6736333 3.95E-97 wgd
Cpe10g00890 Cpe-Chr10:5008797 Cpe19g00348 Cpe-Chr19:3058720 2.88E-96 wgd
Cpe10g00890 Cpe-Chr10:5008797 Cpe02g01228 Cpe-Chr2:11088874 4.12E-95 wgd
Cpe10g00890 Cpe-Chr10:5008797 Cpe05g00925 Cpe-Chr5:6080077 1.66E-96 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe10g00890 - - csv:101212872 300.827