Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe10g00910 ATGGCTTTGTGCCGCATAAATCTTCCTCACCGGTGTTCTTCCGGCACACCGCGCCTTGGCCCCACTTGGTCCCTCCAAAACCCTAATCCTCCTCCTCCTCCTCCTCAATTACTTTCTCCTTTTCCATCTCTTCTCAATTCCAATAAGTTATCCTATTCCAGAATCCGGCGCCGAAGCTTTGTTGCCATGAACGCTCACATGGCCACGGAACCCAAGCCTGTTTCAGATGATAGAATGCTCGTTTATGTTCCTCCTCATCCGTTGATCAAGCACTGGGTTTCAGTTTTGAGGAATGAACAAACTCCTTGCCCCATTTTTAAAAATGCAATGGCAGAGCTAGGAAGACTGCTTATTTATGAAGCTTCAAGGGATTGGTTGCCTACTGTAACAGGGGAGATACAGTCACCCATGGGTGTTGCTTCAGTTGAGTTCGTCGATCCAAGAGAGCCTGTGGCGATAATTCCCATCCTCAGAGCTGGTCTAGCTCTTGCAGAATACGCATCATCTGTATTGCCTGCAACAAAAATGTACCATCTTGGTTCTCGAATTTTTGTGGTTGATCCCATGCTTGCAACAGGTGGCACAGTTGTGGCAGCTCTTGATCTCATAAAGGAACGTGGAATTGACAACAAGCAAATAAAAGTGATATCTGCTGTTGCTGCACCTCCCGCTCTAAAAAAGCTCAGCGAGAAGTTTCCAGGGCTACATGTATACACCGGGATTATTGACCCGACAGTTAACGAAAAAGGGTTTATAATTCCTGGACTTGGAGATGCTGGCGATCGCAGCTTTGGCACATGA 801 46.94 MALCRINLPHRCSSGTPRLGPTWSLQNPNPPPPPPQLLSPFPSLLNSNKLSYSRIRRRSFVAMNAHMATEPKPVSDDRMLVYVPPHPLIKHWVSVLRNEQTPCPIFKNAMAELGRLLIYEASRDWLPTVTGEIQSPMGVASVEFVDPREPVAIIPILRAGLALAEYASSVLPATKMYHLGSRIFVVDPMLATGGTVVAALDLIKERGIDNKQIKVISAVAAPPALKKLSEKFPGLHVYTGIIDPTVNEKGFIIPGLGDAGDRSFGT 266
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5082161 5086679 + Cp4.1LG10g08500.1 Cpe10g00910 476447

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe10g00910 266 CDD PRTases_typeI 146 242 IPR000836 -
Cpe10g00910 266 SUPERFAMILY PRTase-like 81 265 IPR029057 -
Cpe10g00910 266 PANTHER URACIL PHOSPHORIBOSYLTRANSFERASE-LIKE 180 262 - -
Cpe10g00910 266 PANTHER URACIL PHOSPHORIBOSYLTRANSFERASE-LIKE 36 182 - -
Cpe10g00910 266 Gene3D - 182 266 IPR029057 -
Cpe10g00910 266 Gene3D - 79 181 IPR029057 -
Cpe10g00910 266 PANTHER URIDINE KINASE 180 262 - -
Cpe10g00910 266 PANTHER URIDINE KINASE 36 182 - -
Cpe10g00910 266 Pfam Uracil phosphoribosyltransferase 182 266 - -
Cpe10g00910 266 Pfam Uracil phosphoribosyltransferase 83 180 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe10g00910 K00761 upp, UPRT; uracil phosphoribosyltransferase [EC:2.4.2.9] - csv:101209447 427.557
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe10g00910 Cpe-Chr10:5082161 Cpe02g01427 Cpe-Chr2:12387639 5.01E-08 dispersed
Cpe10g00910 Cpe-Chr10:5082161 Cpe06g00842 Cpe-Chr6:5415010 6.65E-11 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g796 . . . . . Bpe03g01028 . . . . Cma03g00404 . Car03g00353 . Sed14g0515 Cpe10g00910 . Bhi03g02043 Tan03g0913 Cmetu08g1944 . . . . Cla04g00768 Cam04g0797 Cec04g0921 Cco04g0972 Clacu04g0832 Cmu04g0825 Cre04g0882 . . Cone13ag1356 Cone19ag1352 Lsi01g01465 Csa04g01535 Chy08g00711 . Blo07g01168 . . Bda05g00954 . . . . . Cmo03g00417 . . . . . . . . . . . . . . . . . . . . . . . . Cme08g02442
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe16g00281 CST 82 562 PRT Gene Family AT2G16570 84.5 2.5e-240 828.6
Cpe05g01298 CST 70 556 PRT Gene Family AT2G16570 83.2 2.7e-239 825.1
Cpe05g01298 CST 72 556 PRT Gene Family AT4G34740 85.0 1.1e-243 839.7
Cpe16g00281 CST 82 562 PRT Gene Family AT4G34740 85.3 1.7e-241 832.4
Cpe16g00281 CST 25 535 PRT Gene Family AT4G38880 69.5 3.0e-200 695.3
Cpe05g01298 CST 69 529 PRT Gene Family AT4G38880 73.0 1.9e-194 676.0
Cpe01g02140 . 1 170 PRT Gene Family AT1G71750 59.9 2.3e-60 229.2
Cpe06g00842 . 40 468 PRT Gene Family AT1G55810 87.2 1.1e-219 759.6
Cpe02g01427 . 19 469 PRT Gene Family AT1G55810 73.2 2.2e-191 665.6
Cpe04g00495 . 19 459 PRT Gene Family AT1G55810 72.5 6.8e-185 644.0
Cpe06g00842 . 65 467 PRT Gene Family AT3G27440 77.2 1.1e-184 643.3
Cpe02g01427 . 80 469 PRT Gene Family AT3G27440 74.6 1.4e-171 599.7
Cpe04g00495 . 80 459 PRT Gene Family AT3G27440 74.0 4.6e-167 584.7
Cpe02g01427 . 1 469 PRT Gene Family AT3G27190 85.5 4.1e-236 814.3
Cpe04g00495 . 1 459 PRT Gene Family AT3G27190 84.6 6.8e-231 797.0
Cpe06g00842 . 51 467 PRT Gene Family AT3G27190 79.9 2.8e-200 695.3
Cpe10g00910 . 4 266 PRT Gene Family AT3G53900 61.0 1.2e-92 337.0
Cpe06g00842 . 30 468 PRT Gene Family AT4G26510 81.7 4.3e-222 767.7
Cpe02g01427 . 11 469 PRT Gene Family AT4G26510 74.3 8.4e-202 700.3
Cpe04g00495 . 7 459 PRT Gene Family AT4G26510 74.2 1.1e-196 683.3
Cpe02g01427 . 1 469 PRT Gene Family AT5G40870 86.0 7.0e-236 813.5
Cpe04g00495 . 1 459 PRT Gene Family AT5G40870 84.6 3.1e-231 798.1
Cpe06g00842 . 51 470 PRT Gene Family AT5G40870 78.8 1.4e-199 693.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005664 1 4 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 4 4 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe10g00910 Cpe_Chr10 FPKM 2.471373 2.571676 4.754066 5.124618 1.429153 1.245273 0.890085 1.10515 1.167833 1.204239